Up-comming patches not live yet

misc-scripts/production_database/sql/patches/patch_65_66a.sql

+-- MAKING ALL VIEWS HAVE INVOKER SECURITY
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW db_list AS
+SELECT  db_id AS db_id,
+        CONCAT(
+          CONCAT_WS('_', db_name, db_type, db_release, db_assembly),
+        db_suffix) AS full_db_name
+FROM    species
+  JOIN  db USING (species_id)
+WHERE species.is_current = true;
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW full_analysis_description AS
+SELECT  list.full_db_name AS full_db_name,
+        ad.logic_name AS logic_name,
+        ad.description AS description,
+        ad.display_label AS display_label,
+        awd.displayable AS displayable,
+        wd.data AS web_data
+FROM db_list list
+  JOIN db USING (db_id)
+  JOIN analysis_web_data awd
+    ON ( db.species_id = awd.species_id
+    AND  db.db_type = awd.db_type )
+  JOIN analysis_description ad USING (analysis_description_id)
+  LEFT JOIN web_data wd USING (web_data_id)
+WHERE   db.is_current = true
+  AND   ad.is_current = true;
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW logic_name_overview AS
+SELECT
+  awd.analysis_web_data_id AS analysis_web_data_id,
+  ad.logic_name AS logic_name,
+  ad.analysis_description_id AS analysis_description_id,
+  s.db_name AS species,
+  s.species_id AS species_id,
+  awd.db_type AS db_type,
+  wd.web_data_id AS web_data_id,
+  awd.displayable AS displayable
+FROM   analysis_description ad
+  JOIN analysis_web_data awd USING (analysis_description_id)
+  JOIN species s USING (species_id)
+  LEFT JOIN web_data wd USING (web_data_id)
+WHERE   s.is_current = true
+  AND   ad.is_current = true;
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW unconnected_analyses AS
+SELECT  ad.analysis_description_id AS analysis_description_id,
+        ad.logic_name AS logic_name
+FROM    analysis_description ad
+  LEFT JOIN analysis_web_data awd USING (analysis_description_id)
+WHERE   awd.species_id IS NULL
+  AND   ad.is_current = true;
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW unused_web_data AS
+SELECT  wd.web_data_id
+FROM    web_data wd
+  LEFT JOIN analysis_web_data awd USING (web_data_id)
+WHERE   awd.analysis_web_data_id IS NULL;
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW attrib_type AS
+SELECT
+  attrib_type_id AS attrib_type_id,
+  code AS code,
+  name AS name,
+  description AS description
+FROM    master_attrib_type
+WHERE   is_current = true
+ORDER BY attrib_type_id;
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW external_db AS
+SELECT
+  external_db_id AS external_db_id,
+  db_name AS db_name,
+  db_release AS db_release,
+  status AS status,
+  priority AS priority,
+  db_display_name AS db_display_name,
+  type AS type,
+  secondary_db_name AS secondary_db_name,
+  secondary_db_table AS secondary_db_table,
+  description AS description
+FROM    master_external_db
+WHERE   is_current = true
+ORDER BY external_db_id;
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW misc_set AS
+SELECT
+  misc_set_id AS misc_set_id,
+  code AS code,
+  name AS name,
+  description AS description,
+  max_length AS max_length
+FROM    master_misc_set
+WHERE   is_current = true
+ORDER BY misc_set_id;
+
+CREATE OR REPLACE  DEFINER = CURRENT_USER SQL SECURITY INVOKER VIEW unmapped_reason AS
+SELECT
+  unmapped_reason_id AS unmapped_reason_id,
+  summary_description AS summary_description,
+  full_description AS full_description
+FROM    master_unmapped_reason
+WHERE   is_current = true
+ORDER BY unmapped_reason_id;

misc-scripts/production_database/sql/patches/patch_65_66b.sql

+-- Patching in support for numerous different names for trinomials
+
+-- Supporting aliases
+CREATE TABLE species_alias (
+  species_alias_id  INTEGER UNSIGNED NOT NULL AUTO_INCREMENT,
+  species_id        INTEGER UNSIGNED NOT NULL,
+  alias             varchar(255) NOT NULL,
+  is_current        BOOLEAN NOT NULL DEFAULT true,
+  created_by    INTEGER,
+  created_at    DATETIME,
+  modified_by   INTEGER,
+  modified_at   DATETIME,
+  PRIMARY KEY (species_alias_id),
+  UNIQUE INDEX (alias, is_current),
+  INDEX sa_speciesid_idx (species_id)
+);
+
+
+-- Supporting production name
+ALTER TABLE species
+ADD COLUMN production_name VARCHAR(255) NOT NULL
+AFTER web_name;
+
+-- Supporting scientific name
+ALTER TABLE species
+ADD COLUMN scientific_name VARCHAR(255) NOT NULL
+AFTER web_name;
+
+-- Supporting URL name
+ALTER TABLE species
+ADD COLUMN url_name VARCHAR(255) NOT NULL
+AFTER production_name;
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