Merging in a patch from Dan S. to allow for multi-species stable ID
mapping and other things specific to the Ensembl Genomes people. Might have broken Ensembl stable ID mapping (in which case I clean it up later).
Showing
- modules/Bio/EnsEMBL/IdMapping/Cache.pm 26 additions, 16 deletionsmodules/Bio/EnsEMBL/IdMapping/Cache.pm
- modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm 79 additions, 0 deletionsmodules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm
- modules/Bio/EnsEMBL/IdMapping/GeneScoreBuilder.pm 35 additions, 0 deletionsmodules/Bio/EnsEMBL/IdMapping/GeneScoreBuilder.pm
- modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblExonGeneric.pm 54 additions, 1 deletion.../EnsEMBL/IdMapping/InternalIdMapper/EnsemblExonGeneric.pm
- modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblGeneGeneric.pm 29 additions, 0 deletions.../EnsEMBL/IdMapping/InternalIdMapper/EnsemblGeneGeneric.pm
- modules/Bio/EnsEMBL/IdMapping/ResultAnalyser.pm 25 additions, 19 deletionsmodules/Bio/EnsEMBL/IdMapping/ResultAnalyser.pm
- modules/Bio/EnsEMBL/IdMapping/StableIdMapper.pm 14 additions, 11 deletionsmodules/Bio/EnsEMBL/IdMapping/StableIdMapper.pm
- modules/Bio/EnsEMBL/IdMapping/TinyExon.pm 22 additions, 0 deletionsmodules/Bio/EnsEMBL/IdMapping/TinyExon.pm
- modules/Bio/EnsEMBL/IdMapping/TinyGene.pm 28 additions, 3 deletionsmodules/Bio/EnsEMBL/IdMapping/TinyGene.pm
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