honeybee and seasquirt initial data added

misc-scripts/xref_mapping/sql/populate_metadata.sql

@@ -22,6 +22,11 @@ INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (8364, 8364,
 INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (13616, 13616,  'monodelphis_domestica',        'opossum,monodelphis,mdomestica,monodelphisdomestica');
 INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (4932, 4932,  'saccharomyces_cerevisiae',  'yeast,saccharomyces,scerevisiae,saccharomycescerevisiae');
 
+INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (7460, 7460,  'apis_mellifera',  'apismellifera,honeybee,amellifera');
+
+INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (7719, 7719,  'ciona_intestinalis', 'cionaintestinalis,cintestinalis,seasquirt'); 
+
+
 ################################################################################
 # SOURCES - types of data we can read
 
@@ -309,6 +314,60 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date
 
 # --------------------------------------------------------------------------------
 
+#### HoneyBee
+
+## Uniprot
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1, 7460, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', '', now(), now(), "UniProtParser");
+
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 7460, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', '', now(), now(), "UniProtParser");
+
+##       refseq
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7460,'ftp://ftp.ncbi.nih.gov/genomes/Apis_mellifera/protein/protein.gbk.gz', '', now(), now(), "RefSeqGPFFParser");
+
+##       refseq
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 7460,'ftp://ftp.ncbi.nih.gov/genomes/Apis_mellifera/RNA/rna.gbk.gz', '', now(), now(), "RefSeqGPFFParser");
+
+##       GO
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 7460,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', '', now(), now(), "GOParser");
+
+##      Interpro
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1300, 7460,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', '', now(), now(), "InterproParser");
+
+##      UniGene
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (6, 7460,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Ame.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Ame.data.gz', '', now(), now(), "UniGeneParser");
+
+
+
+
+#### SeqSquirt
+
+## Uniprot
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1, 7719, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', '', now(), now(), "UniProtParser");
+
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 7719, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', '', now(), now(), "UniProtParser");
+
+##       refseq
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
+
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
+
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
+
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.rna.fna.gz', '', now(), now(), "RefSeqParser");
+
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.rna.fna.gz', '', now(), now(), "RefSeqParser");
+
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.rna.fna.gz', '', now(), now(), "RefSeqParser");
+
+##       GO
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 7719,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', '', now(), now(), "GOParser");
+
+##      Interpro
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1300, 7719,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', '', now(), now(), "InterproParser");
+
+##      UniGene
+INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (6, 7719,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Cin.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Cin.data.gz', '', now(), now(), "UniGeneParser");
+
 
 
 ################################################################################