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Commit e7392cb4 authored by Rhoda Kinsella's avatar Rhoda Kinsella
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Addition of new species to the projection list.

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...@@ -10,12 +10,12 @@ $Data::Dumper::Indent = 0; ...@@ -10,12 +10,12 @@ $Data::Dumper::Indent = 0;
# Remember to check/set the various config optons # Remember to check/set the various config optons
# ------------------------------ config ------------------------------- # ------------------------------ config -------------------------------
my $release = 63; my $release = 65;
my $base_dir = "/lustre/scratch103/ensembl/rjk/projections/"; my $base_dir = "/lustre/scratch103/ensembl/rjk/projections/";
my $conf = "release_63.ini"; # registry config file, specifies Compara location my $conf = "release_65.ini"; # registry config file, specifies Compara location
# location of other databases # location of other databases
...@@ -100,6 +100,7 @@ my @names_1_1 = (["human", "chimp" ], ...@@ -100,6 +100,7 @@ my @names_1_1 = (["human", "chimp" ],
["human", "zebrafinch" ], ["human", "zebrafinch" ],
["human", "panda" ], ["human", "panda" ],
["human", "turkey" ], ["human", "turkey" ],
["human", "tasmanian_devil" ],
["mouse", "kangaroo_rat" ], ["mouse", "kangaroo_rat" ],
["mouse", "rat" ]); ["mouse", "rat" ]);
...@@ -107,6 +108,8 @@ my @names_1_many = (["human", "zebrafish" ], ...@@ -107,6 +108,8 @@ my @names_1_many = (["human", "zebrafish" ],
["human", "medaka" ], ["human", "medaka" ],
["human", "tetraodon" ], ["human", "tetraodon" ],
["human", "fugu" ], ["human", "fugu" ],
["human", "lamprey" ],
["human", "cod" ],
["human", "stickleback"]); ["human", "stickleback"]);
my @go_terms = (["human", "mouse" ], my @go_terms = (["human", "mouse" ],
...@@ -150,6 +153,7 @@ my @go_terms = (["human", "mouse" ], ...@@ -150,6 +153,7 @@ my @go_terms = (["human", "mouse" ],
["human", "anolis" ], ["human", "anolis" ],
["human", "panda" ], ["human", "panda" ],
["human", "turkey" ], ["human", "turkey" ],
["human", "tasmanian_devil"],
["mouse", "human" ], ["mouse", "human" ],
["mouse", "rat" ], ["mouse", "rat" ],
["mouse", "dog" ], ["mouse", "dog" ],
...@@ -177,7 +181,7 @@ my @go_terms = (["human", "mouse" ], ...@@ -177,7 +181,7 @@ my @go_terms = (["human", "mouse" ],
["mouse", "horse" ], ["mouse", "horse" ],
["mouse", "orang_utan" ], ["mouse", "orang_utan" ],
["mouse", "mouse_lemur" ], ["mouse", "mouse_lemur" ],
["mouse", "wallaby" ], ["mouse", "wallaby" ],
["mouse", "dolphin" ], ["mouse", "dolphin" ],
["mouse", "hyrax" ], ["mouse", "hyrax" ],
["mouse", "megabat" ], ["mouse", "megabat" ],
...@@ -188,13 +192,16 @@ my @go_terms = (["human", "mouse" ], ...@@ -188,13 +192,16 @@ my @go_terms = (["human", "mouse" ],
["mouse", "sloth" ], ["mouse", "sloth" ],
["mouse", "zebrafinch" ], ["mouse", "zebrafinch" ],
["mouse", "anolis" ], ["mouse", "anolis" ],
["mouse", "panda" ], ["mouse", "panda" ],
["mouse", "tasmanian_devil"],
["rat", "human" ], ["rat", "human" ],
["rat", "mouse" ], ["rat", "mouse" ],
["zebrafish", "xenopus" ], ["zebrafish", "xenopus" ],
["zebrafish", "fugu" ], ["zebrafish", "fugu" ],
["zebrafish", "tetraodon" ], ["zebrafish", "tetraodon" ],
["zebrafish", "stickleback"], ["zebrafish", "stickleback"],
["zebrafish", "lamprey" ],
["zebrafish", "cod" ],
["human", "stickleback" ], ["human", "stickleback" ],
["mouse", "stickleback" ], ["mouse", "stickleback" ],
["mouse", "turkey" ], ["mouse", "turkey" ],
......
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