Added musa acuminata, solanum tuberosum species; added two new sources,...

Added musa acuminata, solanum tuberosum species; added two new sources, phytozome_gmax and pgsc; added UniParc source to plants genomes

misc-scripts/xref_mapping/xref_config.ini

@@ -1058,7 +1058,7 @@ prio_descr      = main
 parser          = GOSlimParser
 dependent_on    = GO
 release_uri     =
-data_uri        = script:host=>mysql-eg-pan-1.ebi.ac.uk,port=>4276,dbname=>ensemblgenomes_ontology_14_68,
+data_uri        = script:host=>mysql-eg-pan-1.ebi.ac.uk,port=>4276,dbname=>ensemblgenomes_ontology_16_69,
 
 [source GO::homo_sapiens]
 # Used by homo_sapiens
@@ -2337,6 +2337,28 @@ parser          = PomBaseParser
 release_uri     =
 data_uri        = http://www.ebi.ac.uk/~mcdowall/PomBaseFeatureDescriptions_For-v65.txt
 
+[source PGSC::solanum_tuberosum]
+# Used by solanum_tuberosum
+name            = PGSC
+download        = Y
+order           = 10
+priority        = 1
+prio_descr      =
+parser          = PGSCParser
+release_uri     =
+data_uri        = http://solanaceae.plantbiology.msu.edu/data/PGSC_DM_v3.4_gene_func.txt.zip
+
+[source PHYTOZOME_GMAX_GENE::glycine_max]
+# Used by glycine_max
+name            = PHYTOZOME_GMAX_GENE
+download        = Y
+order           = 10
+priority        = 1
+prio_descr      =
+parser          = PhytozomeGmaxParser
+release_uri     =
+data_uri        = ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v8.0/early_release/Gmax_v1.1/annotation/Gmax_v1.1_189_annotation_info.txt.gz
+
 [source UCSC::MULTI]
 # Special source used in UCSCParser.  No species uses this source.
 name            = UCSC
@@ -6012,6 +6034,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = goslim_goa::EG
 source		= ArrayExpress::EG
+source          = UniParc::MULTI
 
 [species glycine_max]
 taxonomy_id     = 3847
@@ -6026,6 +6049,8 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = goslim_goa::EG
 source 		= ArrayExpress::EG
+source          = PHYTOZOME_GMAX_GENE::glycine_max
+source          = UniParc::MULTI
 
 [species oryza_glaberrima]
 taxonomy_id     = 4538
@@ -6040,6 +6065,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = goslim_goa::EG
 source 		= ArrayExpress::EG
+source          = UniParc::MULTI
 
 [species brassica_rapa]
 taxonomy_id     = 51351
@@ -6058,6 +6084,7 @@ source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = goslim_goa::EG
 source 		= ArrayExpress::EG
+source          = UniParc::MULTI
 
 [species oryza_brachyantha]
 taxonomy_id     = 4533
@@ -6076,6 +6103,7 @@ source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = goslim_goa::EG
 source 		= ArrayExpress::EG
+source          = UniParc::MULTI
 
 [species setaria_italica]
 taxonomy_id     = 4555
@@ -6094,6 +6122,7 @@ source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = goslim_goa::EG
 source 		= ArrayExpress::EG
+source          = UniParc::MULTI
 
 [species solanum_lycopersicum]
 taxonomy_id     = 4081
@@ -6112,6 +6141,46 @@ source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = goslim_goa::EG
 source 		= ArrayExpress::EG
+source          = UniParc::MULTI
+
+[species solanum_tuberosum]
+taxonomy_id     = 4113
+aliases         = Solanum tuberosum
+source          = EntrezGene::MULTI
+source          = GO::MULTI
+source          = InterproGO::MULTI
+source          = Interpro::MULTI
+source          = RefSeq_dna::MULTI-Plants
+source          = RefSeq_peptide::MULTI-Plants
+source          = Uniprot/SPTREMBL::MULTI
+source          = Uniprot/SWISSPROT::MULTI
+source		= RFAM::EG
+source		= miRBase::MULTI
+source		= RNAMMER::MULTI
+source		= TRNASCAN_SE::MULTI
+source          = goslim_goa::EG
+source 		= ArrayExpress::EG
+source          = PGSC::solanum_tuberosum
+source          = UniParc::MULTI
+
+[species musa_acuminata]
+taxonomy_id     = 214687
+aliases         = Musa acuminata
+source          = EntrezGene::MULTI
+source          = GO::MULTI
+source          = InterproGO::MULTI
+source          = Interpro::MULTI
+source          = RefSeq_dna::MULTI-Plants
+source          = RefSeq_peptide::MULTI-Plants
+source          = Uniprot/SPTREMBL::MULTI
+source          = Uniprot/SWISSPROT::MULTI
+source		= RFAM::EG
+source		= miRBase::MULTI
+source		= RNAMMER::MULTI
+source		= TRNASCAN_SE::MULTI
+source          = goslim_goa::EG
+source 		= ArrayExpress::EG
+source          = UniParc::MULTI
 
 [species amphimedon_queenslandica]
 taxonomy_id     = 400682