268 enhancer Feature imported from <a rel="external" href="http://www.flybase.org">FlyBase</a>. Enhancer 1
269 zfish_cDNA Danio rerio cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Zebrafish cDNA 1 {'type' => 'cdna','default' => {'contigviewbottom' => 'stack'}}
270 PercentageRepeat Percentage of repetitive elements for top level sequences (such as chromosomes, scaffolds, etc.) Repeats (percent) 1
271 CHIP_PET Positions of mRNA start and end sequences are shown here, obtained by paired-end ditag (PET) sequencing on ChIP (chromatin immunoprecipitation) <a href="/Homo_sapiens_ditags/CHIP_PET.html">samples</a>. Ditags (ChIP-PET) 0
272 XrefExonerateProtein match Protein 0
273 CollapseAffy 0
274 FANTOM_GIS_PET_raw These are short sequence tags from the start sites of polyA transcripts. These ditags were downloaded from the <a rel="external" href="http://fantom.gsc.riken.go.jp/">Riken Fantom</a> project and aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. FANTOM GIS ditags raw 0
275 XrefCoordinateMapping 0
276 exonerate_IG_gene Immunoglobulin (Ig) and T-cell receptor (TcR) genes were imported from the <a rel="external" href="http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D593?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Lefranc&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT">IMGT</a> database using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Ig and TcR transcripts 0 {'type' => 'cdna'}
277 CHIP_PET_raw Raw data for ChIP_PET <a href="/Homo_sapiens_ditags/CHIP_PET.html">sample</a> alignments. 0
278 manual_models Manually curated transcript models made by VB manual_models 0
279 Exonerate_segment Immunoglubulin (Ig) and T-cell receptor (TcR) genes are imported from the <a rel="external" href="http://imgt.cines.fr">IMGT database</a> and aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. See <a href="/info/docs/genebuild/ig_tcr.html" class="cp-external">article</a>. Ig/T-cell receptor gene 0 {'type' => 'cdna'}
280 MergedByHuman 0
281 TargettedGenewise 0
282 GIS_PET_raw Raw data. See <a href="/Homo_sapiens_ditags/GIS_PET.html">method</a> described here. Ditags (GIS raw) 0
283 FANTOM_GSC_PET_raw These are short sequence tags from the start sites of polyA transcripts. These ditags were downloaded from the <a rel="external" href="http://fantom.gsc.riken.go.jp/">Riken Fantom</a> project and aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Fantom GSC raw 0
284 AlignOligoProbes Microarray probes aligned to the genome, if probe sequences are provided by the manufacturer. Aligned oligo 0
285 GIS_PET_Encode See <a href="/Homo_sapiens_ditags/GIS_PET.html">method</a> described here. Ditags (GIS Encode) 0
286 cdna_exonerate 0
287 SimilarityGenewise 0
288 community_models Community provided transcript models from VB community_models 0
289 steve_human_cdna 0
290 BeeBlast WuBLASTX of genomic segments against Bee protein set BLAST Bee 0
291 XrefExonerateDNA Sequences from various databases are matched to Ensembl transcripts using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. These are external references, or 'Xrefs'. DNA match 0
292 steve_mouse_cdna 0
293 ExtendedByHuman 0
294 cdna_est_support Anopheles ESTs and cDNAs aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) and used as support for estgenes cdna_est_support 0 {'type'=>'est'}
295 refseq_human 0
296 HumanOrthologue 0
297 ExtendedByMedaka 0
298 GIS_PET Positions of mRNA start and end sequences are shown here, obtained by paired-end ditag (PET) sequencing by GIS (Genome Institute of Singapore). <a href="/Homo_sapiens_ditags/GIS_PET.html">Method</a> described here. Ditags (GIS) 0
299 probe2transcript Microarray probes from manufacturers are aligned to the genome by Ensembl, if the probe sequences are provided. The mapping is a two-step procedure outlined <a href="/info/docs/microarray_probe_set_mapping.html">here</a>. 0
