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ensembl-gh-mirror
ensembl
Commits
ea945dc6
Commit
ea945dc6
authored
10 years ago
by
Alessandro Vullo
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[
ENSCORESW-1117
]. Get the list of genome components for a polyploid genome.
parent
ce272c1e
Branches
release/67
Tags
cvs/release/ensembl/67
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modules/Bio/EnsEMBL/DBSQL/GenomeContainer.pm
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modules/Bio/EnsEMBL/DBSQL/GenomeContainer.pm
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modules/Bio/EnsEMBL/DBSQL/GenomeContainer.pm
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View file @
ea945dc6
...
...
@@ -1186,4 +1186,30 @@ sub is_polyploid {
return
$polyploid
>
2
;
}
=head2 get_genome_components
Arg : None
Example : $components = $genome->get_genome_components();
Description: Returns the list of (diploid) components, for a
polyploid genome
Returntype : Arrayref
Exceptions : none
Caller : general
Status : Stable
=cut
sub
get_genome_components
{
my
$self
=
shift
;
my
$sql_helper
=
$self
->
dbc
->
sql_helper
;
my
$sql
=
"
SELECT DISTINCT value
FROM seq_region_attrib JOIN attrib_type
USING (attrib_type_id) WHERE attrib_type.code='genome_component'
";
return
$sql_helper
->
execute_simple
(
-
SQL
=>
$sql
);
}
1
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