Patches for release 54

sql/patch_53_54_a.sql

+# patch_53_54_a.sql
+#
+# title: update schema version
+#
+# description:
+# Update schema_version in meta table to 54
+
+UPDATE meta SET meta_value='54' WHERE meta_key='schema_version';
+
+# patch identifier
+INSERT INTO meta (species_id, meta_key, meta_value) VALUES (NULL, 'patch', 'patch_53_54_a.sql|schema_version');
+
+

sql/patch_53_54_b.sql

+# patch_53_54_b.sql
+#
+# title: Widen some text columns
+#
+# description:
+# Change oligo_probe.name to 40 characters, external_db.db_name to 100 chars, analysis.logic_name to 128 characters
+
+ALTER TABLE oligo_probe MODIFY name VARCHAR(40);
+
+ALTER TABLE external_db MODIFY db_name VARCHAR(100) NOT NULL;
+
+ALTER TABLE analysis MODIFY logic_name VARCHAR(128) NOT NULL;
+
+# patch identifier
+INSERT INTO meta (species_id, meta_key, meta_value) VALUES (NULL, 'patch', 'patch_53_54_b.sql|widen_columns');
+
+

sql/patch_53_54_c.sql

+# patch_53_54_c.sql
+#
+# title: Move analysis_id from identity_xref to object_xref
+#
+# description:
+# Add analysis_xref column to object_xref, copy values from identity_xref, remove column from identity_xref.
+# Will allow all object_xref relationships to have an analysis, not just those from sequence matching.
+
+ALTER TABLE object_xref ADD COLUMN analysis_id SMALLINT UNSIGNED NOT NULL;
+
+UPDATE object_xref ox, identity_xref ix SET ox.analysis_id=ix.analysis_id WHERE ox.object_xref_id=ix.object_xref_id;
+
+ALTER TABLE object_xref ADD KEY analysis_idx (analysis_id);
+
+ALTER TABLE identity_xref DROP KEY analysis_idx;
+
+ALTER TABLE identity_xref DROP COLUMN analysis_id;
+
+# patch identifier
+INSERT INTO meta (species_id, meta_key, meta_value) VALUES (NULL, 'patch', 'patch_53_54_c.sql|identity_object_analysis_move');
+
+