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Commit ed144ab1 authored by Tony Cox's avatar Tony Cox
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re-applied lost changed to extend() (sigh)

parent ef7b9bdc
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......@@ -168,22 +168,15 @@ sub extend {
if (! defined $left || ! defined $right ){
$self->throw("Must supply a left and right value when extending a VirtualContig");
}
my $current_left = $self->_left_size;
my $current_right = $self->_right_size;
my $current_ori = $self->_focus_orientation;
my $current_focuscontig = $self->_focus_contig;
my $current_focusposition = $self->_focus_position;
print STDERR "Extending raw contig ".$current_focuscontig->id." (ori = $current_ori)\n";
my $nvc = Bio::EnsEMBL::DB::VirtualContig->new( -focuscontig => $current_focuscontig,
-focusposition => $current_focusposition,
-ori => $current_ori,
-left => $current_left - $left,
-right => $current_right + $right,
);
print STDERR "Extending raw contig ".$self->_focus_contig->id." (ori = $self->_focus_orientation)\n";
my $nvc = Bio::EnsEMBL::DB::VirtualContig->new( -focuscontig => $self->_focus_contig,
-focusposition => $self->_focus_position,
-ori => $self->_focus_orientation,
-left => $self->_left_size - $left,
-right => $self->_right_size + $right,
);
return $nvc;
}
......
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