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ensembl-gh-mirror
ensembl
Commits
ef9c7f22
Commit
ef9c7f22
authored
16 years ago
by
Rhoda Kinsella
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Added DBASS3, DBASS5 and HPA databases
parent
bcd90892
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misc-scripts/xref_mapping/xref_config.ini
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misc-scripts/xref_mapping/xref_config.ini
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View file @
ef9c7f22
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@@ -291,6 +291,30 @@ parser = CodelinkParser
release_uri
=
data_uri
=
file:Codelink/GEHC_Amersham_CodeLink_RWG_300031.fna
[source DBASS5::homo_sapiens]
# Used by homo_sapiens
name
=
DBASS5
download
=
Y
order
=
50
priority
=
1
prio_descr
=
Database of aberrant 5
\'
splice sites.
parser
=
DBASSParser
release_uri
=
data_uri = http://www.som.soton.ac.uk/research/geneticsdiv/dbass5/download.aspx?item=gene
[source DBASS3::homo_sapiens]
# Used by homo_sapiens
name
=
DBASS3
download
=
Y
order
=
50
priority
=
1
prio_descr
=
Database of aberrant 3
\'
splice sites.
parser
=
DBASSParser
release_uri
=
data_uri = http://www.som.soton.ac.uk/research/geneticsdiv/dbass3/download.asp?item=gene
[source DEDb::drosophila_melanogaster]
# Used by drosophila_melanogaster
name
=
DEDb
...
...
@@ -590,6 +614,19 @@ parser = GOParser
release_uri
=
http://www.ebi.ac.uk/GOA/RAT_release.html
data_uri
=
ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/RAT/gene_association.goa_rat.gz
[source HPA::homo_sapiens]
# Used by homo_sapiens
name
=
HPA
download
=
Y
order
=
50
priority
=
1
prio_descr
=
Human Protein Atlas (HPA) database
parser
=
HPAParser
release_uri
=
data_uri = http://www.proteinatlas.org/data/xref.php
[source HGNC::homo_sapiens]
# Used by homo_sapiens
name
=
HGNC
...
...
@@ -2460,8 +2497,11 @@ source = AgilentCGH::homo_sapiens
source
=
AgilentProbe::homo_sapiens
source
=
CCDS::MULTI
source
=
Codelink::homo_sapiens
source
=
DBASS5::homo_sapiens
source
=
DBASS3::homo_sapiens
source
=
EntrezGene::MULTI
source
=
GO::homo_sapiens
source
=
HPA::homo_sapiens
source
=
InterproGO::MULTI
source
=
HGNC::homo_sapiens
source
=
HGNC::homo_sapiens#01
...
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