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Commit f0207d65 authored by Alessandro Vullo's avatar Alessandro Vullo
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Patches applied to human core test DB

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modules/t/test-genome-DBs/homo_sapiens/core/dna_align_feature.txt
+ 13466
− 13466
View file @ f0207d65
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modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
+ 5
− 1
View file @ f0207d65
1 \N schema_version 74
1 \N schema_version 75
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
......@@ -43,3 +43,7 @@
90 \N patch patch_73_74_d.sql|remove_qtl
97 \N patch patch_73_74_e.sql|remove_canonical_annotation
98 \N patch patch_73_74_f.sql|remove_pair_dna_align
99 \N patch patch_73_74_g.sql|add_transcript_idx_tise
100 \N patch patch_73_74_h.sql|alt_allele_unique_gene_idx
101 \N patch patch_74_75_a.sql|schema_version
102 \N patch patch_74_75_b.sql|transcript_source
modules/t/test-genome-DBs/homo_sapiens/core/table.sql
+ 78
− 75
View file @ f0207d65
......@@ -3,19 +3,20 @@ CREATE TABLE `alt_allele` (
`alt_allele_group_id` int(10) unsigned NOT NULL,
`gene_id` int(10) unsigned NOT NULL,
PRIMARY KEY (`alt_allele_id`),
UNIQUE KEY `gene_idx` (`gene_id`),
KEY `gene_id` (`gene_id`,`alt_allele_group_id`)
) ENGINE=MyISAM AUTO_INCREMENT=11 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `alt_allele_attrib` (
`alt_allele_id` int(10) unsigned DEFAULT NULL,
`attrib` enum('IS_REPRESENTATIVE','IS_MOST_COMMON_ALLELE','IN_CORRECTED_ASSEMBLY','HAS_CODING_POTENTIAL','IN_ARTIFICIALLY_DUPLICATED_ASSEMBLY','IN_SYNTENIC_REGION','HAS_SAME_UNDERLYING_DNA_SEQUENCE','IN_BROKEN_ASSEMBLY_REGION','IS_VALID_ALTERNATE','SAME_AS_REPRESENTATIVE','SAME_AS_ANOTHER_ALLELE','MANUALLY_ASSIGNED','AUTOMATICALLY_ASSIGNED') DEFAULT NULL,
KEY `aa_idx` (`alt_allele_id`,`attrib`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `alt_allele_group` (
`alt_allele_group_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
PRIMARY KEY (`alt_allele_group_id`)
) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `analysis` (
`analysis_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT,
......@@ -34,7 +35,7 @@ CREATE TABLE `analysis` (
`gff_feature` varchar(40) DEFAULT NULL,
PRIMARY KEY (`analysis_id`),
UNIQUE KEY `logic_name_idx` (`logic_name`)
) ENGINE=MyISAM AUTO_INCREMENT=8414 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `analysis_description` (
`analysis_id` smallint(5) unsigned NOT NULL,
......@@ -43,7 +44,7 @@ CREATE TABLE `analysis_description` (
`displayable` tinyint(1) NOT NULL DEFAULT '1',
`web_data` text,
UNIQUE KEY `analysis_idx` (`analysis_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `assembly` (
`asm_seq_region_id` int(10) unsigned NOT NULL,
......@@ -56,7 +57,7 @@ CREATE TABLE `assembly` (
UNIQUE KEY `all_idx` (`asm_seq_region_id`,`cmp_seq_region_id`,`asm_start`,`asm_end`,`cmp_start`,`cmp_end`,`ori`),
KEY `cmp_seq_region_idx` (`cmp_seq_region_id`),
KEY `asm_seq_region_idx` (`asm_seq_region_id`,`asm_start`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `assembly_exception` (
`assembly_exception_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -71,13 +72,13 @@ CREATE TABLE `assembly_exception` (
PRIMARY KEY (`assembly_exception_id`),
KEY `sr_idx` (`seq_region_id`,`seq_region_start`),
KEY `ex_idx` (`exc_seq_region_id`,`exc_seq_region_start`)
) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `associated_group` (
`associated_group_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
`description` varchar(128) DEFAULT NULL,
PRIMARY KEY (`associated_group_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `associated_xref` (
`associated_xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -93,7 +94,7 @@ CREATE TABLE `associated_xref` (
KEY `associated_object_idx` (`object_xref_id`),
KEY `associated_idx` (`xref_id`),
KEY `associated_group_idx` (`associated_group_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `attrib_type` (
`attrib_type_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT,
......@@ -102,7 +103,7 @@ CREATE TABLE `attrib_type` (
`description` text,
PRIMARY KEY (`attrib_type_id`),
UNIQUE KEY `code_idx` (`code`)
) ENGINE=MyISAM AUTO_INCREMENT=20 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `coord_system` (
`coord_system_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -115,7 +116,7 @@ CREATE TABLE `coord_system` (
UNIQUE KEY `rank_idx` (`rank`,`species_id`),
UNIQUE KEY `name_idx` (`name`,`version`,`species_id`),
KEY `species_idx` (`species_id`)
) ENGINE=MyISAM AUTO_INCREMENT=10 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `data_file` (
`data_file_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -130,7 +131,7 @@ CREATE TABLE `data_file` (
UNIQUE KEY `df_unq_idx` (`coord_system_id`,`analysis_id`,`name`,`file_type`),
KEY `df_name_idx` (`name`),
KEY `df_analysis_idx` (`analysis_id`)
) ENGINE=MyISAM AUTO_INCREMENT=2 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `density_feature` (
`density_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -142,7 +143,7 @@ CREATE TABLE `density_feature` (
PRIMARY KEY (`density_feature_id`),
KEY `seq_region_idx` (`density_type_id`,`seq_region_id`,`seq_region_start`),
KEY `seq_region_id_idx` (`seq_region_id`)
) ENGINE=MyISAM AUTO_INCREMENT=319 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `density_type` (
`density_type_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -152,7 +153,7 @@ CREATE TABLE `density_type` (
`value_type` enum('sum','ratio') NOT NULL,
PRIMARY KEY (`density_type_id`),
UNIQUE KEY `analysis_idx` (`analysis_id`,`block_size`,`region_features`)
) ENGINE=MyISAM AUTO_INCREMENT=7 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `dependent_xref` (
`object_xref_id` int(10) unsigned NOT NULL,
......@@ -161,7 +162,7 @@ CREATE TABLE `dependent_xref` (
PRIMARY KEY (`object_xref_id`),
KEY `dependent` (`dependent_xref_id`),
KEY `master_idx` (`master_xref_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `ditag` (
`ditag_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -170,7 +171,7 @@ CREATE TABLE `ditag` (
`tag_count` smallint(6) unsigned NOT NULL DEFAULT '1',
`sequence` tinytext NOT NULL,
PRIMARY KEY (`ditag_id`)
) ENGINE=MyISAM AUTO_INCREMENT=3278359 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `ditag_feature` (
`ditag_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -190,13 +191,13 @@ CREATE TABLE `ditag_feature` (
KEY `ditag_idx` (`ditag_id`),
KEY `ditag_pair_idx` (`ditag_pair_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`,`seq_region_end`)
) ENGINE=MyISAM AUTO_INCREMENT=4828764 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `dna` (
`seq_region_id` int(10) unsigned NOT NULL,
`sequence` longtext NOT NULL,
PRIMARY KEY (`seq_region_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 MAX_ROWS=750000 AVG_ROW_LENGTH=19000;
) ENGINE=MyISAM MAX_ROWS=750000 AVG_ROW_LENGTH=19000;
CREATE TABLE `dna_align_feature` (
`dna_align_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -222,7 +223,7 @@ CREATE TABLE `dna_align_feature` (
KEY `hit_idx` (`hit_name`),
KEY `analysis_idx` (`analysis_id`),
KEY `external_db_idx` (`external_db_id`)
) ENGINE=MyISAM AUTO_INCREMENT=29797194 DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
) ENGINE=MyISAM MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
CREATE TABLE `exon` (
`exon_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -241,7 +242,7 @@ CREATE TABLE `exon` (
PRIMARY KEY (`exon_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`),
KEY `stable_id_idx` (`stable_id`,`version`)
) ENGINE=MyISAM AUTO_INCREMENT=162051 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `exon_transcript` (
`exon_id` int(10) unsigned NOT NULL,
......@@ -250,7 +251,7 @@ CREATE TABLE `exon_transcript` (
PRIMARY KEY (`exon_id`,`transcript_id`,`rank`),
KEY `transcript` (`transcript_id`),
KEY `exon` (`exon_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `external_db` (
`external_db_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -265,14 +266,14 @@ CREATE TABLE `external_db` (
`description` text,
PRIMARY KEY (`external_db_id`),
UNIQUE KEY `db_name_db_release_idx` (`db_name`,`db_release`)
) ENGINE=MyISAM AUTO_INCREMENT=4201 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `external_synonym` (
`xref_id` int(10) unsigned NOT NULL,
`synonym` varchar(100) NOT NULL,
PRIMARY KEY (`xref_id`,`synonym`),
KEY `name_index` (`synonym`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `gene` (
`gene_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -298,7 +299,7 @@ CREATE TABLE `gene` (
KEY `analysis_idx` (`analysis_id`),
KEY `stable_id_idx` (`stable_id`,`version`),
KEY `canonical_transcript_id_idx` (`canonical_transcript_id`)
) ENGINE=MyISAM AUTO_INCREMENT=18284 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `gene_archive` (
`gene_stable_id` varchar(128) NOT NULL,
......@@ -313,7 +314,7 @@ CREATE TABLE `gene_archive` (
KEY `transcript_idx` (`transcript_stable_id`,`transcript_version`),
KEY `translation_idx` (`translation_stable_id`,`translation_version`),
KEY `peptide_archive_id_idx` (`peptide_archive_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `gene_attrib` (
`gene_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -322,7 +323,7 @@ CREATE TABLE `gene_attrib` (
KEY `gene_idx` (`gene_id`),
KEY `type_val_idx` (`attrib_type_id`,`value`(40)),
KEY `val_only_idx` (`value`(40))
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `identity_xref` (
`object_xref_id` int(10) unsigned NOT NULL,
......@@ -336,14 +337,14 @@ CREATE TABLE `identity_xref` (
`score` double DEFAULT NULL,
`evalue` double DEFAULT NULL,
PRIMARY KEY (`object_xref_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `interpro` (
`interpro_ac` varchar(40) NOT NULL,
`id` varchar(40) NOT NULL,
UNIQUE KEY `accession_idx` (`interpro_ac`,`id`),
KEY `id_idx` (`id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `intron_supporting_evidence` (
`intron_supporting_evidence_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -359,7 +360,7 @@ CREATE TABLE `intron_supporting_evidence` (
PRIMARY KEY (`intron_supporting_evidence_id`),
UNIQUE KEY `analysis_id` (`analysis_id`,`seq_region_id`,`seq_region_start`,`seq_region_end`,`seq_region_strand`,`hit_name`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`)
) ENGINE=MyISAM AUTO_INCREMENT=6 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `karyotype` (
`karyotype_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -370,13 +371,13 @@ CREATE TABLE `karyotype` (
`stain` varchar(40) NOT NULL,
PRIMARY KEY (`karyotype_id`),
KEY `region_band_idx` (`seq_region_id`,`band`)
) ENGINE=MyISAM AUTO_INCREMENT=2 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `map` (
`map_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
`map_name` varchar(30) NOT NULL,
PRIMARY KEY (`map_id`)
) ENGINE=MyISAM AUTO_INCREMENT=9 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `mapping_session` (
`mapping_session_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -388,7 +389,7 @@ CREATE TABLE `mapping_session` (
`new_assembly` varchar(20) NOT NULL DEFAULT '',
`created` datetime NOT NULL,
PRIMARY KEY (`mapping_session_id`)
) ENGINE=MyISAM AUTO_INCREMENT=4 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `mapping_set` (
`mapping_set_id` int(10) unsigned NOT NULL,
......@@ -396,7 +397,7 @@ CREATE TABLE `mapping_set` (
`external_schema_build` varchar(20) NOT NULL,
PRIMARY KEY (`mapping_set_id`),
UNIQUE KEY `mapping_idx` (`internal_schema_build`,`external_schema_build`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `marker` (
`marker_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -410,7 +411,7 @@ CREATE TABLE `marker` (
PRIMARY KEY (`marker_id`),
KEY `marker_idx` (`marker_id`,`priority`),
KEY `display_idx` (`display_marker_synonym_id`)
) ENGINE=MyISAM AUTO_INCREMENT=101 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `marker_feature` (
`marker_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -423,7 +424,7 @@ CREATE TABLE `marker_feature` (
PRIMARY KEY (`marker_feature_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`),
KEY `analysis_idx` (`analysis_id`)
) ENGINE=MyISAM AUTO_INCREMENT=102 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `marker_map_location` (
`marker_id` int(10) unsigned NOT NULL,
......@@ -434,7 +435,7 @@ CREATE TABLE `marker_map_location` (
`lod_score` double DEFAULT NULL,
PRIMARY KEY (`marker_id`,`map_id`),
KEY `map_idx` (`map_id`,`chromosome_name`,`position`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `marker_synonym` (
`marker_synonym_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -444,7 +445,7 @@ CREATE TABLE `marker_synonym` (
PRIMARY KEY (`marker_synonym_id`),
KEY `marker_synonym_idx` (`marker_synonym_id`,`name`),
KEY `marker_idx` (`marker_id`)
) ENGINE=MyISAM AUTO_INCREMENT=1063 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `meta` (
`meta_id` int(11) NOT NULL AUTO_INCREMENT,
......@@ -454,14 +455,14 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=99 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) NOT NULL,
`coord_system_id` int(10) unsigned NOT NULL,
`max_length` int(11) DEFAULT NULL,
UNIQUE KEY `cs_table_name_idx` (`coord_system_id`,`table_name`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `misc_attrib` (
`misc_feature_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -470,7 +471,7 @@ CREATE TABLE `misc_attrib` (
KEY `misc_feature_idx` (`misc_feature_id`),
KEY `type_val_idx` (`attrib_type_id`,`value`(40)),
KEY `val_only_idx` (`value`(40))
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `misc_feature` (
`misc_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -480,14 +481,14 @@ CREATE TABLE `misc_feature` (
`seq_region_strand` tinyint(4) NOT NULL DEFAULT '0',
PRIMARY KEY (`misc_feature_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`)
) ENGINE=MyISAM AUTO_INCREMENT=10 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `misc_feature_misc_set` (
`misc_feature_id` int(10) unsigned NOT NULL DEFAULT '0',
`misc_set_id` smallint(5) unsigned NOT NULL DEFAULT '0',
PRIMARY KEY (`misc_feature_id`,`misc_set_id`),
KEY `reverse_idx` (`misc_set_id`,`misc_feature_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `misc_set` (
`misc_set_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT,
......@@ -497,7 +498,7 @@ CREATE TABLE `misc_set` (
`max_length` int(10) unsigned NOT NULL,
PRIMARY KEY (`misc_set_id`),
UNIQUE KEY `code_idx` (`code`)
) ENGINE=MyISAM AUTO_INCREMENT=11 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `object_xref` (
`object_xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -510,7 +511,7 @@ CREATE TABLE `object_xref` (
UNIQUE KEY `xref_idx` (`xref_id`,`ensembl_object_type`,`ensembl_id`,`analysis_id`),
KEY `ensembl_idx` (`ensembl_object_type`,`ensembl_id`),
KEY `analysis_idx` (`analysis_id`)
) ENGINE=MyISAM AUTO_INCREMENT=253694 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `ontology_xref` (
`object_xref_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -519,7 +520,7 @@ CREATE TABLE `ontology_xref` (
UNIQUE KEY `object_source_type_idx` (`object_xref_id`,`source_xref_id`,`linkage_type`),
KEY `source_idx` (`source_xref_id`),
KEY `object_idx` (`object_xref_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `operon` (
`operon_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -537,7 +538,7 @@ CREATE TABLE `operon` (
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`),
KEY `name_idx` (`display_label`),
KEY `stable_id_idx` (`stable_id`,`version`)
) ENGINE=MyISAM AUTO_INCREMENT=4 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `operon_transcript` (
`operon_transcript_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -556,13 +557,13 @@ CREATE TABLE `operon_transcript` (
KEY `operon_idx` (`operon_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`),
KEY `stable_id_idx` (`stable_id`,`version`)
) ENGINE=MyISAM AUTO_INCREMENT=5 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `operon_transcript_gene` (
`operon_transcript_id` int(10) unsigned DEFAULT NULL,
`gene_id` int(10) unsigned DEFAULT NULL,
KEY `operon_transcript_gene_idx` (`operon_transcript_id`,`gene_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `peptide_archive` (
`peptide_archive_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -570,7 +571,7 @@ CREATE TABLE `peptide_archive` (
`peptide_seq` mediumtext NOT NULL,
PRIMARY KEY (`peptide_archive_id`),
KEY `checksum` (`md5_checksum`)
) ENGINE=MyISAM AUTO_INCREMENT=11 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `prediction_exon` (
`prediction_exon_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -586,7 +587,7 @@ CREATE TABLE `prediction_exon` (
PRIMARY KEY (`prediction_exon_id`),
KEY `transcript_idx` (`prediction_transcript_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`)
) ENGINE=MyISAM AUTO_INCREMENT=194 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `prediction_transcript` (
`prediction_transcript_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -599,7 +600,7 @@ CREATE TABLE `prediction_transcript` (
PRIMARY KEY (`prediction_transcript_id`),
KEY `analysis_idx` (`analysis_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`)
) ENGINE=MyISAM AUTO_INCREMENT=18085 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `protein_align_feature` (
`protein_align_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -623,7 +624,7 @@ CREATE TABLE `protein_align_feature` (
KEY `hit_idx` (`hit_name`),
KEY `analysis_idx` (`analysis_id`),
KEY `external_db_idx` (`external_db_id`)
) ENGINE=MyISAM AUTO_INCREMENT=11554507 DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
) ENGINE=MyISAM MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
CREATE TABLE `protein_feature` (
`protein_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -643,7 +644,7 @@ CREATE TABLE `protein_feature` (
KEY `analysis_idx` (`analysis_id`),
KEY `translation_idx` (`translation_id`),
KEY `hitname_idx` (`hit_name`)
) ENGINE=MyISAM AUTO_INCREMENT=242848 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `repeat_consensus` (
`repeat_consensus_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -656,7 +657,7 @@ CREATE TABLE `repeat_consensus` (
KEY `class` (`repeat_class`),
KEY `consensus` (`repeat_consensus`(10)),
KEY `type` (`repeat_type`)
) ENGINE=MyISAM AUTO_INCREMENT=1020 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `repeat_feature` (
`repeat_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -673,7 +674,7 @@ CREATE TABLE `repeat_feature` (
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`),
KEY `repeat_idx` (`repeat_consensus_id`),
KEY `analysis_idx` (`analysis_id`)
) ENGINE=MyISAM AUTO_INCREMENT=922516 DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
) ENGINE=MyISAM MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
CREATE TABLE `seq_region` (
`seq_region_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -683,7 +684,7 @@ CREATE TABLE `seq_region` (
PRIMARY KEY (`seq_region_id`),
UNIQUE KEY `name_cs_idx` (`name`,`coord_system_id`),
KEY `cs_idx` (`coord_system_id`)
) ENGINE=MyISAM AUTO_INCREMENT=965911 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `seq_region_attrib` (
`seq_region_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -692,14 +693,14 @@ CREATE TABLE `seq_region_attrib` (
KEY `seq_region_idx` (`seq_region_id`),
KEY `type_val_idx` (`attrib_type_id`,`value`(40)),
KEY `val_only_idx` (`value`(40))
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `seq_region_mapping` (
`external_seq_region_id` int(10) unsigned NOT NULL,
`internal_seq_region_id` int(10) unsigned NOT NULL,
`mapping_set_id` int(10) unsigned NOT NULL,
KEY `mapping_set_idx` (`mapping_set_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `seq_region_synonym` (
`seq_region_synonym_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -709,7 +710,7 @@ CREATE TABLE `seq_region_synonym` (
PRIMARY KEY (`seq_region_synonym_id`),
UNIQUE KEY `syn_idx` (`synonym`),
KEY `seq_region_idx` (`seq_region_id`)
) ENGINE=MyISAM AUTO_INCREMENT=5 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `simple_feature` (
`simple_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -724,7 +725,7 @@ CREATE TABLE `simple_feature` (
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`),
KEY `analysis_idx` (`analysis_id`),
KEY `hit_idx` (`display_label`)
) ENGINE=MyISAM AUTO_INCREMENT=95700 DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
) ENGINE=MyISAM MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
CREATE TABLE `splicing_event` (
`splicing_event_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -738,7 +739,7 @@ CREATE TABLE `splicing_event` (
PRIMARY KEY (`splicing_event_id`),
KEY `gene_idx` (`gene_id`),
KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `splicing_event_feature` (
`splicing_event_feature_id` int(10) unsigned NOT NULL,
......@@ -753,7 +754,7 @@ CREATE TABLE `splicing_event_feature` (
PRIMARY KEY (`splicing_event_feature_id`,`exon_id`,`transcript_id`),
KEY `se_idx` (`splicing_event_id`),
KEY `transcript_idx` (`transcript_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `splicing_transcript_pair` (
`splicing_transcript_pair_id` int(10) unsigned NOT NULL,
......@@ -762,7 +763,7 @@ CREATE TABLE `splicing_transcript_pair` (
`transcript_id_2` int(10) unsigned NOT NULL,
PRIMARY KEY (`splicing_transcript_pair_id`),
KEY `se_idx` (`splicing_event_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `stable_id_event` (
`old_stable_id` varchar(128) DEFAULT NULL,
......@@ -775,7 +776,7 @@ CREATE TABLE `stable_id_event` (
UNIQUE KEY `uni_idx` (`mapping_session_id`,`old_stable_id`,`new_stable_id`,`type`),
KEY `new_idx` (`new_stable_id`),
KEY `old_idx` (`old_stable_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `supporting_feature` (
`exon_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -783,7 +784,7 @@ CREATE TABLE `supporting_feature` (
`feature_id` int(10) unsigned NOT NULL DEFAULT '0',
UNIQUE KEY `all_idx` (`exon_id`,`feature_type`,`feature_id`),
KEY `feature_idx` (`feature_type`,`feature_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
) ENGINE=MyISAM MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
CREATE TABLE `transcript` (
`transcript_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -794,6 +795,7 @@ CREATE TABLE `transcript` (
`seq_region_end` int(10) unsigned NOT NULL,
`seq_region_strand` tinyint(2) NOT NULL,
`display_xref_id` int(10) unsigned DEFAULT NULL,
`source` varchar(20) NOT NULL,
`biotype` varchar(40) NOT NULL,
`status` enum('KNOWN','NOVEL','PUTATIVE','PREDICTED','KNOWN_BY_PROJECTION','UNKNOWN','ANNOTATED') DEFAULT NULL,
`description` text,
......@@ -810,7 +812,7 @@ CREATE TABLE `transcript` (
KEY `xref_id_index` (`display_xref_id`),
KEY `analysis_idx` (`analysis_id`),
KEY `stable_id_idx` (`stable_id`,`version`)
) ENGINE=MyISAM AUTO_INCREMENT=21752 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `transcript_attrib` (
`transcript_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -819,15 +821,16 @@ CREATE TABLE `transcript_attrib` (
KEY `transcript_idx` (`transcript_id`),
KEY `type_val_idx` (`attrib_type_id`,`value`(40)),
KEY `val_only_idx` (`value`(40))
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `transcript_intron_supporting_evidence` (
`transcript_id` int(10) unsigned NOT NULL,
`intron_supporting_evidence_id` int(10) unsigned NOT NULL,
`previous_exon_id` int(10) unsigned NOT NULL,
`next_exon_id` int(10) unsigned NOT NULL,
PRIMARY KEY (`intron_supporting_evidence_id`,`transcript_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
PRIMARY KEY (`intron_supporting_evidence_id`,`transcript_id`),
KEY `transcript_idx` (`transcript_id`)
) ENGINE=MyISAM ;
CREATE TABLE `transcript_supporting_feature` (
`transcript_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -835,7 +838,7 @@ CREATE TABLE `transcript_supporting_feature` (
`feature_id` int(10) unsigned NOT NULL DEFAULT '0',
UNIQUE KEY `all_idx` (`transcript_id`,`feature_type`,`feature_id`),
KEY `feature_idx` (`feature_type`,`feature_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
) ENGINE=MyISAM MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
CREATE TABLE `translation` (
`translation_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -851,7 +854,7 @@ CREATE TABLE `translation` (
PRIMARY KEY (`translation_id`),
KEY `transcript_idx` (`transcript_id`),
KEY `stable_id_idx` (`stable_id`,`version`)
) ENGINE=MyISAM AUTO_INCREMENT=21747 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `translation_attrib` (
`translation_id` int(10) unsigned NOT NULL DEFAULT '0',
......@@ -860,7 +863,7 @@ CREATE TABLE `translation_attrib` (
KEY `translation_idx` (`translation_id`),
KEY `type_val_idx` (`attrib_type_id`,`value`(40)),
KEY `val_only_idx` (`value`(40))
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `unmapped_object` (
`unmapped_object_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -879,14 +882,14 @@ CREATE TABLE `unmapped_object` (
KEY `anal_exdb_idx` (`analysis_id`,`external_db_id`),
KEY `id_idx` (`identifier`(50)),
KEY `ext_db_identifier_idx` (`external_db_id`,`identifier`)
) ENGINE=MyISAM AUTO_INCREMENT=7 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `unmapped_reason` (
`unmapped_reason_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT,
`summary_description` varchar(255) DEFAULT NULL,
`full_description` varchar(255) DEFAULT NULL,
PRIMARY KEY (`unmapped_reason_id`)
) ENGINE=MyISAM AUTO_INCREMENT=4 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
CREATE TABLE `xref` (
`xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -901,5 +904,5 @@ CREATE TABLE `xref` (
UNIQUE KEY `id_index` (`dbprimary_acc`,`external_db_id`,`info_type`,`info_text`,`version`),
KEY `display_index` (`display_label`),
KEY `info_type_idx` (`info_type`)
) ENGINE=MyISAM AUTO_INCREMENT=1000008 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM ;
modules/t/test-genome-DBs/homo_sapiens/core/transcript.txt
+ 25
− 25
View file @ f0207d65
21716 18256 1282 469283 30274334 30298904 1 152202 protein_coding KNOWN \N 1 21716 ENST00000310998 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21717 18256 1282 469283 30285705 30300924 1 152191 protein_coding KNOWN \N 1 21717 ENST00000278995 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21718 18257 1282 469283 30301733 30318881 1 0 protein_coding NOVEL \N 1 21718 ENST00000252021 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21719 18258 1282 469283 30320853 30327869 -1 40090 protein_coding KNOWN \N 1 21719 ENST00000202017 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21720 18259 1282 469283 30371004 30372906 1 102413 protein_coding KNOWN \N 1 21720 ENST00000217299 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21721 18260 1282 469283 30386305 30408041 1 34986 protein_coding KNOWN \N 1 21721 ENST00000300415 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21722 18260 1282 469283 30386305 30408041 1 34986 protein_coding KNOWN \N 1 21722 ENST00000262659 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21723 18261 1282 469283 30428114 30477716 1 158525 protein_coding KNOWN \N 1 21723 ENST00000262651 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21724 18262 1282 469283 30485596 30543114 1 120576 protein_coding KNOWN \N 1 21724 ENST00000217315 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21725 18263 1282 469283 30565065 30566129 -1 128607 protein_coding KNOWN \N 1 21725 ENST00000246203 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21726 18264 1282 469283 30568364 30583588 -1 17034 protein_coding KNOWN \N 1 21726 ENST00000246229 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21727 18265 1282 469283 30583753 30593764 1 168444 protein_coding KNOWN \N 1 21727 ENST00000278989 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21728 18265 1282 469283 30583753 30614524 1 128597 protein_coding KNOWN \N 1 21728 ENST00000217326 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21729 18266 1282 469283 30653524 30709209 1 28819 protein_coding KNOWN \N 1 21729 ENST00000262652 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21730 18267 1282 469283 30805794 30813218 1 29946 protein_coding KNOWN \N 1 21730 ENST00000306058 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21731 18267 1282 469283 30735607 30815178 1 128324 protein_coding KNOWN \N 1 21731 ENST00000306067 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21732 18268 1282 469283 30822726 30850611 -1 34892 protein_coding KNOWN \N 1 21732 ENST00000201962 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21733 18268 1282 469283 30840814 30859269 -1 89326 protein_coding KNOWN \N 1 21733 ENST00000216932 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21734 18269 1282 469283 30885729 30911383 -1 89323 protein_coding KNOWN \N 1 21734 ENST00000201961 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21735 18270 1282 469283 31070930 31071301 -1 332 protein_coding KNOWN \N 1 21735 ENST00000310461 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21736 18271 1282 469283 31074431 31089984 -1 168324 protein_coding KNOWN \N 1 21736 ENST00000278980 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21737 18272 1282 469283 31108924 31155894 1 15966 protein_coding KNOWN \N 1 21737 ENST00000201963 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21738 18273 1282 469283 31166507 31196939 1 97759 protein_coding KNOWN \N 1 21738 ENST00000217347 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21739 18274 1282 469283 31210077 31225346 1 0 protein_coding NOVEL \N 1 21739 ENST00000300425 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21740 18275 1282 965899 10060 10405 1 0 protein_coding NOVEL \N 1 21740 ENST00000355555 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21716 18256 1282 469283 30274334 30298904 1 152202 ensembl protein_coding KNOWN \N 1 21716 ENST00000310998 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21717 18256 1282 469283 30285705 30300924 1 152191 ensembl protein_coding KNOWN \N 1 21717 ENST00000278995 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21718 18257 1282 469283 30301733 30318881 1 0 havana protein_coding NOVEL \N 1 21718 ENST00000252021 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21719 18258 1282 469283 30320853 30327869 -1 40090 havana protein_coding KNOWN \N 1 21719 ENST00000202017 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21720 18259 1282 469283 30371004 30372906 1 102413 vega protein_coding KNOWN \N 1 21720 ENST00000217299 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21721 18260 1282 469283 30386305 30408041 1 34986 vega protein_coding KNOWN \N 1 21721 ENST00000300415 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21722 18260 1282 469283 30386305 30408041 1 34986 ensembl protein_coding KNOWN \N 1 21722 ENST00000262659 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21723 18261 1282 469283 30428114 30477716 1 158525 ensembl protein_coding KNOWN \N 1 21723 ENST00000262651 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21724 18262 1282 469283 30485596 30543114 1 120576 ensembl protein_coding KNOWN \N 1 21724 ENST00000217315 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21725 18263 1282 469283 30565065 30566129 -1 128607 ensembl protein_coding KNOWN \N 1 21725 ENST00000246203 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21726 18264 1282 469283 30568364 30583588 -1 17034 ensembl protein_coding KNOWN \N 1 21726 ENST00000246229 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21727 18265 1282 469283 30583753 30593764 1 168444 ensembl protein_coding KNOWN \N 1 21727 ENST00000278989 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21728 18265 1282 469283 30583753 30614524 1 128597 ensembl protein_coding KNOWN \N 1 21728 ENST00000217326 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21729 18266 1282 469283 30653524 30709209 1 28819 ensembl protein_coding KNOWN \N 1 21729 ENST00000262652 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21730 18267 1282 469283 30805794 30813218 1 29946 ensembl protein_coding KNOWN \N 1 21730 ENST00000306058 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21731 18267 1282 469283 30735607 30815178 1 128324 ensembl protein_coding KNOWN \N 1 21731 ENST00000306067 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21732 18268 1282 469283 30822726 30850611 -1 34892 ensembl protein_coding KNOWN \N 1 21732 ENST00000201962 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21733 18268 1282 469283 30840814 30859269 -1 89326 ensembl protein_coding KNOWN \N 1 21733 ENST00000216932 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21734 18269 1282 469283 30885729 30911383 -1 89323 ensembl protein_coding KNOWN \N 1 21734 ENST00000201961 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21735 18270 1282 469283 31070930 31071301 -1 332 ensembl protein_coding KNOWN \N 1 21735 ENST00000310461 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21736 18271 1282 469283 31074431 31089984 -1 168324 ensembl protein_coding KNOWN \N 1 21736 ENST00000278980 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21737 18272 1282 469283 31108924 31155894 1 15966 ensembl protein_coding KNOWN \N 1 21737 ENST00000201963 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21738 18273 1282 469283 31166507 31196939 1 97759 ensembl protein_coding KNOWN \N 1 21738 ENST00000217347 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21739 18274 1282 469283 31210077 31225346 1 0 ensembl protein_coding NOVEL \N 1 21739 ENST00000300425 1 2004-12-06 12:00:00 2004-12-06 12:00:00
21740 18275 1282 965899 10060 10405 1 0 ensembl protein_coding NOVEL \N 1 21740 ENST00000355555 1 2004-12-06 12:00:00 2004-12-06 12:00:00
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