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Commit f2cb6af6 authored by Graham McVicker's avatar Graham McVicker
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corrected clone creation sql

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misc-scripts/surgery/SeqStoreConverter/BasicConverter.pm
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View file @ f2cb6af6
......@@ -284,7 +284,7 @@ sub clone_to_seq_region {
my $select_sth = $dbh->prepare
("SELECT cl.clone_id,
CONCAT(cl.embl_acc, '.', cl.embl_version),
MAX(ctg.embl_offset)+ctg.length-1
MAX(ctg.embl_offset+ctg.length-1)
FROM $source.clone cl, $source.contig ctg
WHERE cl.clone_id = ctg.clone_id GROUP BY ctg.clone_id");
$select_sth->execute();
......
misc-scripts/surgery/SeqStoreConverter/MusMusculus.pm
+ 1
− 1
View file @ f2cb6af6
......@@ -179,7 +179,7 @@ sub clone_to_seq_region {
my $select_sth = $dbh->prepare
("SELECT cl.clone_id,
CONCAT(cl.embl_acc, '.', cl.embl_version),
MAX(ctg.embl_offset)+ctg.length-1
MAX(ctg.embl_offset+ctg.length-1)
FROM $source.clone cl, $source.contig ctg
WHERE cl.clone_id = ctg.clone_id
AND cl.embl_acc not like 'C%'
......
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