modifications so that toplevel is now a pseudo coordinate system representing...
modifications so that toplevel is now a pseudo coordinate system representing the highest real coordinate system in a given region
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- modules/Bio/EnsEMBL/AssemblyMapper.pm 4 additions, 4 deletionsmodules/Bio/EnsEMBL/AssemblyMapper.pm
- modules/Bio/EnsEMBL/ChainedAssemblyMapper.pm 4 additions, 2 deletionsmodules/Bio/EnsEMBL/ChainedAssemblyMapper.pm
- modules/Bio/EnsEMBL/Chromosome.pm 4 additions, 1 deletionmodules/Bio/EnsEMBL/Chromosome.pm
- modules/Bio/EnsEMBL/CoordSystem.pm 83 additions, 12 deletionsmodules/Bio/EnsEMBL/CoordSystem.pm
- modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm 8 additions, 0 deletionsmodules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm 111 additions, 93 deletionsmodules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm 5 additions, 2 deletionsmodules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm 6 additions, 1 deletionmodules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm
- modules/Bio/EnsEMBL/Feature.pm 6 additions, 3 deletionsmodules/Bio/EnsEMBL/Feature.pm
- modules/Bio/EnsEMBL/Mapper.pm 44 additions, 22 deletionsmodules/Bio/EnsEMBL/Mapper.pm
- modules/Bio/EnsEMBL/Mapper/Coordinate.pm 23 additions, 30 deletionsmodules/Bio/EnsEMBL/Mapper/Coordinate.pm
- modules/Bio/EnsEMBL/Slice.pm 20 additions, 11 deletionsmodules/Bio/EnsEMBL/Slice.pm
- modules/Bio/EnsEMBL/TopLevelAssemblyMapper.pm 308 additions, 0 deletionsmodules/Bio/EnsEMBL/TopLevelAssemblyMapper.pm
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