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ensembl-gh-mirror
ensembl
Commits
f40f8e7e
Commit
f40f8e7e
authored
13 years ago
by
Monika Komorowska
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added another ignore sql statement for Uniprot/SPTREMBL priority_description protein_evidence_gt_3
parent
1957b5b5
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misc-scripts/xref_mapping/XrefMapper/culex_pipiens.pm
+8
-0
8 additions, 0 deletions
misc-scripts/xref_mapping/XrefMapper/culex_pipiens.pm
misc-scripts/xref_mapping/XrefMapper/danio_rerio.pm
+18
-0
18 additions, 0 deletions
misc-scripts/xref_mapping/XrefMapper/danio_rerio.pm
with
26 additions
and
0 deletions
misc-scripts/xref_mapping/XrefMapper/culex_pipiens.pm
+
8
−
0
View file @
f40f8e7e
...
...
@@ -40,6 +40,14 @@ sub transcript_display_xref_sources {
Uniprot/SPTREMBL)
;
my
%ignore
;
$ignore
{"
Uniprot/SPTREMBL
"}
=
(
<<
BIGN
);
SELECT
object_xref_id
FROM
object_xref
JOIN
xref
USING
(
xref_id
)
JOIN
source
USING
(
source_id
)
WHERE
ox_status
=
'
DUMP_OUT
'
AND
name
=
'
Uniprot/SPTREMBL
'
AND
priority_description
=
'
protein_evidence_gt_3
'
BIGN
return
[
\
@list
,
\
%ignore
];
}
...
...
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misc-scripts/xref_mapping/XrefMapper/danio_rerio.pm
+
18
−
0
View file @
f40f8e7e
...
...
@@ -91,6 +91,24 @@ sub transcript_display_xref_sources {
EntrezGene)
;
my
%ignore
;
$ignore
{"
EntrezGene
"}
=
(
<<
AIGN
);
SELECT
ox
.
object_xref_id
FROM
object_xref
ox
,
dependent_xref
dx
,
source
s1
,
xref
x1
,
source
s2
,
xref
x2
WHERE
ox
.
object_xref_id
=
dx
.
object_xref_id
AND
dx
.
dependent_xref_id
=
x1
.
xref_id
AND
x1
.
source_id
=
s1
.
source_id
and
s1
.
name
=
'
EntrezGene
'
AND
x2
.
xref_id
=
dx
.
master_xref_id
and
x2
.
source_id
=
s2
.
source_id
AND
(
s2
.
name
like
'
Refseq_dna_predicted
'
or
s2
.
name
like
'
RefSeq_peptide_predicted
')
AND
ox
.
ox_status
=
'
DUMP_OUT
'
AIGN
$ignore
{"
Uniprot/SPTREMBL
"}
=
(
<<
BIGN
);
SELECT
object_xref_id
FROM
object_xref
JOIN
xref
USING
(
xref_id
)
JOIN
source
USING
(
source_id
)
WHERE
ox_status
=
'
DUMP_OUT
'
AND
name
=
'
Uniprot/SPTREMBL
'
AND
priority_description
=
'
protein_evidence_gt_3
'
BIGN
return
[
\
@list
,
\
%ignore
];
...
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