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Commit f4ae246e authored by Andreas Kusalananda Kähäri's avatar Andreas Kusalananda Kähäri
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be even smarter.

parent 20aaa6b8
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Showing with 16 additions and 3 deletions
modules/Bio/EnsEMBL/Registry.pm
View file @ f4ae246e
......@@ -2454,6 +2454,8 @@ sub get_species_and_object_type {
if ( !%stable_id_prefix ) {
# Fetch stable ID prefixes from all connected databases.
my $dbc;
foreach
my $dba ( @{ $self->get_all_DBAdaptors( '-group' => 'core' ) } )
{
......@@ -2461,7 +2463,11 @@ sub get_species_and_object_type {
if ( lc($species) eq 'multi' ) { next }
my $dbh = $dba->dbc()->db_handle();
if ( !defined($dbc) || $dbc->host() ne $dba->dbc()->host() ) {
$dbc = $dba->dbc();
}
my $dbh = $dbc->db_handle();
my $statement =
"SELECT meta_value "
......@@ -2580,12 +2586,19 @@ FIRSTLOOP:
SECONDLOOP:
foreach my $species (@nonstandard_prefix_species) {
my $dbc;
foreach my $dba ( @{$self->get_all_DBAdaptors('-group' => 'core',
'-species' => $species
) } )
{
my $dbh = $dba->dbc()->db_handle();
my $dbhost = $dba->dbc()->host();
if ( !defined($dbc) || $dbc->host() ne $dba->dbc()->host() ) {
$dbc = $dba->dbc();
}
my $dbh = $dbc->db_handle();
my $dbhost = $dbc->host();
foreach my $type ( 'Gene', 'Transcript', 'Translation', 'Exon' ) {
my $statement =
......
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