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ensembl-gh-mirror
ensembl
Commits
f56e8405
Commit
f56e8405
authored
13 years ago
by
Andreas Kusalananda Kähäri
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In internal_id_rescore(): sort out possible bug.
parent
1dce067d
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1 changed file
modules/Bio/EnsEMBL/IdMapping/ScoreBuilder.pm
+4
-2
4 additions, 2 deletions
modules/Bio/EnsEMBL/IdMapping/ScoreBuilder.pm
with
4 additions
and
2 deletions
modules/Bio/EnsEMBL/IdMapping/ScoreBuilder.pm
+
4
−
2
View file @
f56e8405
...
...
@@ -190,7 +190,8 @@ sub internal_id_rescore {
my
$ambiguous
=
0
;
foreach
my
$e
(
@entries
)
{
if
(
$e
->
target
==
$source
and
$e
->
score
==
$entries
[
0
]
)
{
if
(
$e
->
target
==
$source
and
$e
->
score
==
$entries
[
0
]
->
score
()
)
{
$ambiguous
=
1
;
last
;
}
...
...
@@ -201,7 +202,8 @@ sub internal_id_rescore {
# now penalise those where source id != target id and score == best
# score
foreach
my
$e
(
@entries
)
{
if
(
$e
->
target
!=
$source
and
$e
->
score
==
$entries
[
0
]
)
{
if
(
$e
->
target
!=
$source
and
$e
->
score
==
$entries
[
0
]
->
score
()
)
{
# PENALTY: This stable ID is not any longer on the same object.
$matrix
->
set_score
(
$source
,
$e
->
target
(),
0.8
*$e
->
score
()
);
$i
++
;
...
...
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