Commit f8579a78 authored by Magali Ruffier's avatar Magali Ruffier
Browse files

adjust the total count summing

parent 1dbb968d
......@@ -40,11 +40,11 @@ sub run {
|| $b->seq_region_length() <=> $a->seq_region_length() } @$slices) ;
while (my $slice = shift @sorted_slices) {
$iteration++;
$count += $self->get_density($slice, $option);
if ($slice->has_karyotype) {
my @blocks = $self->generate_blocks($slice);
for my $block (@blocks) {
my $feature = $self->get_density($block, $option);
$count += $feature;
my $df = Bio::EnsEMBL::DensityFeature->new( -seq_region => $slice,
-start => $block->start,
-end => $block->end,
......@@ -56,7 +56,6 @@ sub run {
}
} else {
my $feature = $self->get_density($slice, $option);
$count += $feature;
my $df = Bio::EnsEMBL::DensityFeature->new( -seq_region => $slice,
-start => $slice->start,
-end => $slice->end,
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment