Skip to content
Snippets Groups Projects
Commit fa6cb567 authored by Magali Ruffier's avatar Magali Ruffier
Browse files

use explicit slice with adaptor

parent eddd8762
No related branches found
No related tags found
No related merge requests found
......@@ -52,20 +52,15 @@ my $ta = $dba->get_TranscriptAdaptor();
}
{
my $cs = $dba->get_CoordSystemAdaptor()->fetch_by_name('chromosome');
my $sa = $dba->get_SliceAdaptor();
my $slice = $sa->fetch_by_region('chromosome', 12, 1, 10);
my $feature = Bio::EnsEMBL::Feature->new(
-SLICE => Bio::EnsEMBL::Slice->new(
-COORD_SYSTEM => $cs,
-SEQ => ('A'x10),
-SEQ_REGION_NAME => 'wibble',
-START => 1,
-END => 10
),
-SLICE => $slice,
-START => 1,
-END => 10,
-STRAND => 1,
);
my $expected = qq{wibble\t0\t10\t\t1000\t+\n};
my $expected = qq{12\t0\t10\t\t1000\t+\n};
assert_bed($feature, $expected, 'Default feature should seralise without attributes');
}
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment