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misc-scripts/analysis_description/analysis.descriptions

@@ -125,7 +125,7 @@
 122	snpDensity	Density of Single Nucleotide Polymorphisms (SNPs) calculated by variation_density.pl (see scripts at the <a rel="external" href="http://cvs.sanger.ac.uk/cgi-bin/viewcvs.cgi/">Sanger Centre CVS</a> repository).	SNP Density	1	
 123	Medaka_TranscriptCoalescer	Medaka genes, predicted using Medaka ESTs as input for the gene-predicting module TranscriptCoalescer.	EST-based gene	1	 {'label_key' => '[text_label] [display_label]','label' => '[text_label] [display_label]'}
 124	human_refseq	Human proteins from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> used in the <a href="/info/docs/genebuild/index.html" class="cp-external">genebuild</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&amp;HITS=10&amp;hits=10&amp;RESULTFORMAT=&amp;andorexactfulltext=and&amp;searchid=1&amp;FIRSTINDEX=0&amp;sortspec=relevance&amp;volume=14&amp;firstpage=988&amp;resourcetype=HWCIT">GeneWise</a>.	Human RefSeq prot.	1	
-125	Vertrna	Positions of vertebrate mRNAs along the genome.  mRNAs are from the <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> database.  Initial alignments are performed using TBLASTN of Genscan-predicted peptides against EMBL mRNAs.	EMBL vertebrate cDNA	1	 {'type' => 'cdna'}
+125	Vertrna	Positions of vertebrate mRNAs along the genome.  mRNAs are from the <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> database.  Initial alignments are performed using TBLASTN of Genscan-predicted peptides against EMBL mRNAs.	EMBL vertebrate cDNA	1	 {'type' => 'cdna','default' => {'contigviewbottom' => 'stack'}}
 126	fugu_cdna	Takifugu cDNAs from <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> and <a rel="external" href="http://www.ncbi.nlm.nih.gov/Genbank/">Genbank</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>.	Takifugu cDNA	1	 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'}
 127	Tenrec_ab_initio_RepeatMask	Interspersed repeats and low complexity sequence identified by <a rel="external" href="http://www.repeatmasker.org">RepeatMasker</a> using ab initio repeat profiles specific to Echinops telfairi.	Repeats (Recon)	1	
 128	Uniprot	Proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted peptides to UniProtKB proteins.	UniProtKB prot.	1