Commits · 01cb9d51b03a08977a5764240891151dec514d78 · ensembl-gh-mirror / ensembl

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Jun 19, 2012
- Prefer sub ref to dereference · 01cb9d51
  Andy Yates authored 12 years ago
  
  01cb9d51
Jun 18, 2012
- Stop accidental cleanup of databases during object cleanup · 5009ec78
  Andy Yates authored 12 years ago
  
  5009ec78
Jun 08, 2012

Patching issue with there being a difference between NULL and and empty string... · d668ce92

Andy Yates authored 12 years ago

Patching issue with there being a difference between NULL and and empty string WRT description and also plugged a gap in the code when we were trying to query using a display_label which the api allows to be NULL but the DB does not

d668ce92

Jun 07, 2012
- Use note rather than debug. Info comes out when you're runing the code and not in test harness mode · ceed0880
  Andy Yates authored 12 years ago
  
  ceed0880
May 29, 2012
- Tests altered to include threaded insertions to test for "transactional" behaviour · 0b85d877
  Kieron Taylor authored 12 years ago
  
  0b85d877
Mar 04, 2011
- dbentries MUST have an analysis now due to INSERT IGNORE in dbentrie cahnged to just INSERT · fc2098b8
  Ian Longden authored 14 years ago
  
  fc2098b8
Oct 04, 2010
- go_xref is now ontology_xref · 596eead9
  Ian Longden authored 14 years ago
  
  596eead9
Nov 04, 2009
- Changed query_identity to xref_identity and target_identity to ensembl_identity · 7398663b
  Rhoda Kinsella authored 15 years ago
  
  7398663b
Feb 19, 2009

Updated the following arguments: · b7273acf

Rhoda Kinsella authored 16 years ago

	QUERY_IDENTITY	->	XREF_IDENTITY
	TARGET_IDENTITY	->	ENSEMBL_IDENTITY
	QUERY_START	->	XREF_START
	QUERY_END	->	XREF_END
	TRANSLATION_START	->	ENSEMBL_START
	TRANSLATION_END	->	ENSEMBL_END

b7273acf

Jul 22, 2008
- tested 2 new methods: to get db_name for an external_db_id and fetch... · 9eb72a87
  Daniel Rios authored 16 years ago
```
tested 2 new methods: to get db_name for an external_db_id and fetch db_entries for a source (db_name)
```
  9eb72a87
Jul 05, 2007
- Added API support and regression testing for go_xref.source_xref_id data · 4742ea17
  Will Spooner authored 17 years ago
  
  4742ea17
Apr 16, 2007
- test data changed for external_db type checks · 260a9a57
  Ian Longden authored 17 years ago
  
  260a9a57
Apr 13, 2007
- added test for optional info_type to get_all_db(Entries/Links) for translation, transcript and gene · e14eee62
  Ian Longden authored 17 years ago
  
  e14eee62
Mar 07, 2007
- Added test for type storing and retrieval. · edfe5f88
  Glenn Proctor authored 18 years ago
  
  edfe5f88
- Typo. · f2e0d636
  Glenn Proctor authored 18 years ago
  
  f2e0d636
Oct 12, 2006
- Removed xref priority. · ec038cbb
  Glenn Proctor authored 18 years ago
  
  ec038cbb
Sep 01, 2006
- Added test for xref priority. · 94fa23b2
  Glenn Proctor authored 18 years ago
  
  94fa23b2
Aug 14, 2006
- Merged mapper fix branch onto head · 15011dab
  Ian Longden authored 18 years ago
  
  15011dab
May 02, 2006
- changes to DBEntryAdaptor->store() and AttributeAdaptor->store() · 691a194d
  Patrick Meidl authored 18 years ago
  
  691a194d
Feb 23, 2006
- Added info_type and info_text to xref. · 1f63d134
  Glenn Proctor authored 19 years ago
  
  1f63d134
Feb 21, 2006
- Merged branch-mysql5 back into HEAD · 199ec320
  Glenn Proctor authored 19 years ago
  
  199ec320
Aug 16, 2005
- SWISSPROT->Uniprot/SWISSPROT similar for trembl · f08cba0f
  Ian Longden authored 19 years ago
  
  f08cba0f
Aug 02, 2005
- Added db_display_name · 900c1050
  Glenn Proctor authored 19 years ago
  
  900c1050
May 31, 2005
- Added test for new linkable & priority columns in external_db. · a1f2f1ce
  Glenn Proctor authored 19 years ago
  
  a1f2f1ce
Jul 30, 2004
- DBAdaptor method db renamed dbc to stop confusion so all references to this have been changed · c8fcd6c2
  Ian Longden authored 20 years ago
  
  c8fcd6c2
Jul 29, 2004
- changes for registry mainly due to the fact that DBAdaptor no longer inherits from DBConnection · 5ae7d3c3
  Ian Longden authored 20 years ago
  
  5ae7d3c3
Jul 23, 2004
- updated tests to use centralised ensembl-test framework · 9cc34eb7
  Graham McVicker authored 20 years ago
  
  9cc34eb7
Mar 19, 2004
- added tests for object_xref deletion · 32c5c651
  Graham McVicker authored 21 years ago
  
  32c5c651
Feb 26, 2004
- fixed test count · c9d6aff6
  Graham McVicker authored 21 years ago
  
  c9d6aff6
- added tests for DBEntryAdaptor fetch_by_dbID and fetch_by_db_accession methods · 26443da4
  Graham McVicker authored 21 years ago
  
  26443da4
Feb 03, 2004
- added tests for IdentityXref mapping · 7a6af8fd
  Graham McVicker authored 21 years ago
  
  7a6af8fd
Jan 09, 2004
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored 21 years ago
  
  fc6ced68
Aug 26, 2003
- somw more tests for alingments and cordinate transforms · 466ff2c2
  Arne Stabenau authored 21 years ago
  
  466ff2c2
Jul 17, 2003
- added more/updated tests for go_xrefs · 623b61b2
  Graham McVicker authored 21 years ago
  
  623b61b2
Jun 11, 2003
- less verbosity · 6a652e2d
  Graham McVicker authored 21 years ago
  
  6a652e2d
Jun 04, 2003
- test DBEntry and Adaptor · 61894965
  Arne Stabenau authored 21 years ago
  
  61894965