Commits · 0472d2195ce61850a7e73a86f5f435c161d60568 · ensembl-gh-mirror / ensembl

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Nov 23, 2010
- Much more helpful output! · 0472d219
  Andreas Kusalananda Kähäri authored 14 years ago
  
  0472d219
- Also get the Experimental Factor Ontology (EFO). · 89d386f7
  Andreas Kusalananda Kähäri authored 14 years ago
  
  89d386f7
Nov 22, 2010
- merge in of new CDS remark checking code (ie copes with phases) · 77c70de3
  Steve Trevanion authored 14 years ago
  
  77c70de3
- more resilient · f7acf7e8
  Steve Trevanion authored 14 years ago
  
  f7acf7e8
- changes to do checks per chromosome · bfe907e1
  Maurice Hendrix authored 14 years ago
  
  bfe907e1
- changes to do checks per chromosome · e7aa3f29
  Maurice Hendrix authored 14 years ago
  
  e7aa3f29
- changes to do checks per chromosome · 4cfbba31
  Maurice Hendrix authored 14 years ago
  
  4cfbba31
- Make SQL more readable. · 027d9619
  Andreas Kusalananda Kähäri authored 14 years ago
  
  027d9619
- Better readability when finding a new database. · 76d98b4c
  Andreas Kusalananda Kähäri authored 14 years ago
  
  76d98b4c
- In new(): Throw if top_level == 1 and rank != 0. Pointed out by · d8522ccf
  Andreas Kusalananda Kähäri authored 14 years ago
```
Michael S.
```
  d8522ccf
Nov 19, 2010
- *** empty log message *** · 65a9b253
  Maurice Hendrix authored 14 years ago
  
  65a9b253
- *** empty log message *** · fa6d6d93
  Maurice Hendrix authored 14 years ago
  
  fa6d6d93
- bug fix, re-introduced old bug :( · b5983022
  Maurice Hendrix authored 14 years ago
  
  b5983022
- Rename "summary email" to "mapping summary". · 7372dcc9
  Andreas Kusalananda Kähäri authored 14 years ago
  
  7372dcc9
- Rename "summary email" to "mapping summary" throughout. · 3a9f2fb2
  Andreas Kusalananda Kähäri authored 14 years ago
  
  3a9f2fb2
- moved getting slices, chromosmes genets etc to new SpecesParams.pm module · fd399aac
  Maurice Hendrix authored 14 years ago
  
  fd399aac
Nov 18, 2010
- Don't create SQL that might write into the production database. · 695cebb3
  Andreas Kusalananda Kähäri authored 14 years ago
  
  695cebb3
- Update the Anopheles Celera source (correct name) · 971e67e0
  Karyn Megy authored 14 years ago
  
  971e67e0
- Take care of case where a field is compared with NULL (undef). · 4d6dedaf
  Andreas Kusalananda Kähäri authored 14 years ago
  
  4d6dedaf
- More verbose. · acb40f07
  Andreas Kusalananda Kähäri authored 14 years ago
```
Updated regular expression in DB name parsing.

Now allows assembly version to be alphanumeric.
```
  acb40f07
- new test data for seq region synonyms · 3414f175
  Ian Longden authored 14 years ago
  
  3414f175
Nov 16, 2010
- moved getting slices, chromosmes genets etc to new SpecesParams.pm module · 6fa2ad60
  Maurice Hendrix authored 14 years ago
  
  6fa2ad60
- Dump of the production database at the start of the cycle for release 61. · 6dff9ba2
  Andreas Kusalananda Kähäri authored 14 years ago
  
  6dff9ba2
- Small script to perform a database dump of the production database. · 35ce1542
  Andreas Kusalananda Kähäri authored 14 years ago
  
  35ce1542
- Replace the files here with a README that briefly describes the new · 2ba25469
  Andreas Kusalananda Kähäri authored 14 years ago
```
state of things (the master version of the unmapped_reason table lives
in the production database).
```
  2ba25469
- Remove files no longer used. · 80b4e6be
  Andreas Kusalananda Kähäri authored 14 years ago
  
  80b4e6be
- Replace the files here with a README that briefly describes the new · 61515878
  Andreas Kusalananda Kähäri authored 14 years ago
```
state of things (the master version of the external_db table lives in
the production database).
```
  61515878
- Remove files no longer used. · 69c8e18c
  Andreas Kusalananda Kähäri authored 14 years ago
  
  69c8e18c
- synchronized with the production database · 3a5ee200
  Magali Ruffier authored 14 years ago
  
  3a5ee200
- file synchronized with the production database · 5f8de429
  Magali Ruffier authored 14 years ago
  
  5f8de429
- Make sure store() stores the analyses with lower-case logic_name. · c20c1730
  Andreas Kusalananda Kähäri authored 14 years ago
  
  c20c1730
- New version number is 61 · dcdfa5af
  Ian Longden authored 14 years ago
  
  dcdfa5af
- Allow the assembly to be alphanumeric in the 'db' table. · 68b6732a
  Andreas Kusalananda Kähäri authored 14 years ago
  
  68b6732a
Nov 15, 2010
- Make fetch_by_dbID() use fetch_all_by_Transcript() (to get the · 78164fd3
  Andreas Kusalananda Kähäri authored 14 years ago
```
alternative translations) if the fetch_by_Transcript() call returns
nothing.
```
  78164fd3
- Use assert_ref() in fetch_by_Transcript(). · fa56b271
  Andreas Kusalananda Kähäri authored 14 years ago
  
  fa56b271
- Twiddle with fetch_by_translation_id() to aid my thinking. · 3821c9ac
  Andreas Kusalananda Kähäri authored 14 years ago
  
  3821c9ac
- Reformat in preparation for possible rework of fetch_by_translation_id(). · 4a8d7bf6
  Andreas Kusalananda Kähäri authored 14 years ago
  
  4a8d7bf6
- reduce description to the RecNAME full or if that is not present the Subname... · c4204a2b
  Ian Longden authored 14 years ago
```
reduce description to the RecNAME full or if that is not present the Subname Full. Also remove EC numbers
```
  c4204a2b
- Re-added turkey to list of targets. · fbb48359
  Glenn Proctor authored 14 years ago
  
  fbb48359
- Correct IKMC data that were missing display label (pointed out by Will S.). · f14ddad3
  Andreas Kusalananda Kähäri authored 14 years ago
  
  f14ddad3