NOTE: No validation is done to see if the stable ID actually exists.

  Description:  Get the species name, object type (gene, transcript,
                translation, or exon etc.), and database type for a
                stable ID.

  Arg[1]     :  String
                The stable ID to find species and object type for.

  Example    :  my ( $species, $object_type, $db_type ) =
                  $registry->get_species_and_object_type('ENST00000326632');

  Return type:  Array consisting of the species name, object type,
                and database type.  The array may be empty if no
                match is found.

  Exceptions :  none
  Status     :  At Risk.

alignsliceviewbottom should be displayed as 'as_collapsed_label'.

databases with huge number of tables (mart databases), this would
otherwise fail.

Some smaller fixes too.

$target_db.

rewriting this later.

Run myisamchk without --quick so that it actually repairs broken tables.
Add --slient (twice) to make it silent.

Prefix the staging directory with "tmp." to make it easier to see that a
directory might be a botched staging directory.

'/usr/local/ensembl/mysql/bin/myisamchk' as per reply to helpdesk ticket
[Hinxton #147717] from Guy Coates.

Some formatting.

directories.

Usage:
  ./CopyDBoverServer.pl --pass=XXX [--noflush] [--nocheck] [--force] \
                        [--subset=XXX] [--help] input_file

  Use --help to get a much longer help text.

updated documentation on the format of the external_db file and how to use the update_external_dbs.pl script

Add attrib for gene count of lincRNAs

Addition of human and mouse projection to turkey plus human, mouse and danio to
stickleback.