Commits · 08f2a002fa269c9ecd874c0fa0b889a2258d1e78 · ensembl-gh-mirror / ensembl

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Oct 17, 2011
- changes related to stable_id merge · 08f2a002
  Monika Komorowska authored 13 years ago
  
  08f2a002
- remove partupdate mode · 28dea3b5
  Ian Longden authored 13 years ago
  
  28dea3b5
- changes related to stable_id merge · c400294c
  Monika Komorowska authored 13 years ago
  
  c400294c
- changes related to stable_id merge · 955cb328
  Monika Komorowska authored 13 years ago
  
  955cb328
- changes related to stable_id merge · c4827fef
  Monika Komorowska authored 13 years ago
  
  c4827fef
- changes related to stable_id merge · 98660dd1
  Monika Komorowska authored 13 years ago
  
  98660dd1
- added example of using previous release of core to test new xrefs · 66518706
  Monika Komorowska authored 13 years ago
  
  66518706
- Change species to database parameter · 9d56b70c
  Gautier Koscielny authored 13 years ago
  
  9d56b70c
- changes related to stable_id merge · e7882806
  Monika Komorowska authored 13 years ago
  
  e7882806
- changes related to stable_id merge · 032b0177
  Monika Komorowska authored 13 years ago
  
  032b0177
- changes related to stable_id merge · 120922f1
  Monika Komorowska authored 13 years ago
  
  120922f1
Oct 14, 2011
- Check if $ontology_version is defined before using it. It won't be if · 46999f24
  Andreas Kusalananda Kähäri authored 13 years ago
```
there's no ontology database available.
```
  46999f24
Oct 13, 2011
- Add filters to remove Beta characters and to remove backslash from the gene name. · 10d2e061
  Gautier Koscielny authored 13 years ago
  
  10d2e061
- Use --skip-opt when dumping the old data to allow for using diff to · 8a2d7927
  Andreas Kusalananda Kähäri authored 13 years ago
```
compare dumps.

Don't drop the backup table.
```
  8a2d7927
- Finally implement --species and --type correctly. · b862ddc6
  Andreas Kusalananda Kähäri authored 13 years ago
```
Dump tables with --skip-opt so that one can use diff to diff them if one
wants to.

Do not drop the backup tables.
```
  b862ddc6
- Added SchistoDB and jgi_triad sources · 890141f4
  Arnaud Kerhornou authored 13 years ago
  
  890141f4
- Updated SchistoDB source name · ad13acd9
  Arnaud Kerhornou authored 13 years ago
  
  ad13acd9
- bug fix to not obtaining results from prepare call · 567783aa
  Ian Longden authored 13 years ago
  
  567783aa
Oct 12, 2011
- removed partupdate mode, no lonfger feasable · 12028eac
  Ian Longden authored 13 years ago
  
  12028eac
- chnage 64 -> 65 for mouse and human databases · 229c1f30
  Ian Longden authored 13 years ago
  
  229c1f30
- Barking up the wrong tree... · 26ece12d
  Andreas Kusalananda Kähäri authored 13 years ago
  
  26ece12d
- Fix syntax error. · 63e4d907
  Andreas Kusalananda Kähäri authored 13 years ago
  
  63e4d907
- Implement --species and --type command line options. · 6d7c4406
  Andreas Kusalananda Kähäri authored 13 years ago
  
  6d7c4406
- Added extra dbs to the list · 87a144c4
  Arnaud Kerhornou authored 13 years ago
  
  87a144c4
- Update info on new flags. · 4e6d0e4e
  Andreas Kusalananda Kähäri authored 13 years ago
  
  4e6d0e4e
- updated sources for S. mansoni and T. adhaerens · d0c5a124
  Arnaud Kerhornou authored 13 years ago
  
  d0c5a124
- stable_id merge changes · 3930d05a
  Monika Komorowska authored 13 years ago
  
  3930d05a
Oct 11, 2011
- Fix SQL line with too much space in it. · c8647e20
  Andreas Kusalananda Kähäri authored 13 years ago
  
  c8647e20
- Specific logic for assignment of gene names and description valid for all... · 4706d5e5
  Arnaud Kerhornou authored 13 years ago
```
Specific logic for assignment of gene names and description valid for all Ensembl Genomes species at the exception of a few species (e.g. S. pombe or S. cer)
```
  4706d5e5
- Added a repeated warning suppression for absent adaptor or dbID · 89140a76
  Kieron Taylor authored 13 years ago
  
  89140a76
- stable_id merge changes · 4750cea0
  Monika Komorowska authored 13 years ago
  
  4750cea0
- Added EG11 plants and protists sources and species. Also added S. pombe sources and species · 53c82e06
  Arnaud Kerhornou authored 13 years ago
  
  53c82e06
- use POSIX. · 9207b56c
  Andreas Kusalananda Kähäri authored 13 years ago
  
  9207b56c
- Mark two of the options as not currently implemented, until I implement · a4ce78a2
  Andreas Kusalananda Kähäri authored 13 years ago
```
them (soon!).
```
  a4ce78a2
- another name chnage in expr to match file name change · 11b49894
  Ian Longden authored 13 years ago
  
  11b49894
- only get species_id if doing official naming · 9e113ac8
  Ian Longden authored 13 years ago
  
  9e113ac8
- change pass variable name to passive to make it more obvious. Bettere checking of ftp status · 12921ac1
  Ian Longden authored 13 years ago
  
  12921ac1
- file name changed so change expr to match · 6234fe4c
  Ian Longden authored 13 years ago
  
  6234fe4c
- Dump of the production database before genebuild handover for release 65. · 8c988249
  Andreas Kusalananda Kähäri authored 13 years ago
  
  8c988249
- LSF dependencies removed. Correction of sql statement to get the list of cores. · 105fc708
  Gautier Koscielny authored 13 years ago
  
  105fc708