Commits · 17f43327b66f6e04c45db66f4580c4245c675baf · ensembl-gh-mirror / ensembl

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Mar 04, 2004
- - bug fix: cdna_exon_start was not properly set after some exon splitting events · 17f43327
  Graham McVicker authored 21 years ago
```
- a few typos etc.
```
  17f43327
- Added group_id, level_id methods as well as hslice. Modified in consequence... · 4d184a66
  Abel Ureta-Vidal authored 21 years ago
```
Added group_id, level_id methods as well as hslice. Modified in consequence the invert method to set hslice
```
  4d184a66
- Added strands_reversed method that 0 or 1. 0 if the strand and hstrand are... · e7bd7d62
  Abel Ureta-Vidal authored 21 years ago
```
Added strands_reversed method that 0 or 1. 0 if the strand and hstrand are those originally obtained by the alignment program, 1 other wise
```
  e7bd7d62
- most of create_transcripts() implmentation moved out to methods in Transcript package · cfb7addb
  Graham McVicker authored 21 years ago
  
  cfb7addb
- set of methods for transcript splitting and final transcript creation · ab86cf67
  Graham McVicker authored 21 years ago
  
  ab86cf67
- added flush_Exons method · fe9c7393
  Graham McVicker authored 21 years ago
  
  fe9c7393
- added set of conditions and means to test if transfered exon has fatal status · fc1f8a7c
  Graham McVicker authored 21 years ago
  
  fc1f8a7c
Mar 03, 2004
- Updated new MySQL directory layout for ecs2 nodes · 48118401
  Abel Ureta-Vidal authored 21 years ago
  
  48118401
- deprecated type method · 24ce4f7d
  Graham McVicker authored 21 years ago
  
  24ce4f7d
- removed use of contig() method from find_supporting_evidence method · 2169f319
  Graham McVicker authored 21 years ago
  
  2169f319
- tweaked pods to make pdoc parser happier · 3b35eb22
  Graham McVicker authored 21 years ago
  
  3b35eb22
- removed unneeded includes · 0ecc7327
  Graham McVicker authored 21 years ago
  
  0ecc7327
- removed superfluous "()" · c5403e79
  Graham McVicker authored 21 years ago
  
  c5403e79
- adjusted for changed meta data in test db · 071c012a
  Graham McVicker authored 21 years ago
  
  071c012a
- duplicate keys were present in meta table of testdb · 05e51da0
  Graham McVicker authored 21 years ago
  
  05e51da0
Mar 02, 2004
- updated test meta table to provide explicit assembly mappings · 2796e77b
  Graham McVicker authored 21 years ago
  
  2796e77b
- check exon sequences and warn if they are not retrieved · 003be45e
  Graham McVicker authored 21 years ago
  
  003be45e
- warn and return undef is sequence is requested for unstranded exon · 8d55aaa6
  Graham McVicker authored 21 years ago
  
  8d55aaa6
- warn and return undef is sequence is requested for unstranded feature · b43cdd55
  Graham McVicker authored 21 years ago
  
  b43cdd55
- added to PODs · 7a1249c4
  Graham McVicker authored 21 years ago
  
  7a1249c4
- update · 3da5485b
  Web Admin authored 21 years ago
  
  3da5485b
- hide/restore meta_coord table so test db state is preserved after test feature stores · eff60462
  Graham McVicker authored 21 years ago
  
  eff60462
- updated for changes related to seq_region_attribs · 9dd921b1
  Graham McVicker authored 21 years ago
  
  9dd921b1
Mar 01, 2004
- removed seq_region_attrib functions now present on AttributeAdaptor instead · 7e646b02
  Graham McVicker authored 21 years ago
  
  7e646b02
- removed tests for attrib functions which have been moved to AttributeAdaptor from SliceAdaptor · 8b27ca5d
  Graham McVicker authored 21 years ago
  
  8b27ca5d
- set_seq_region_attrib is gone, use store_on_Slice in AttributeAdaptor now · dbbb6663
  Arne Stabenau authored 21 years ago
  
  dbbb6663
- fixed some warnings/test errors · 5f2e184a
  Graham McVicker authored 21 years ago
  
  5f2e184a
- made attrib_type.description optional · 82d2335b
  Arne Stabenau authored 21 years ago
  
  82d2335b
- fixed test count · b096923c
  Graham McVicker authored 21 years ago
  
  b096923c
- fixed attribute testing · 3e13b687
  Arne Stabenau authored 21 years ago
  
  3e13b687
- removed since broken, can be readded later · cda3b3dc
  Graham McVicker authored 21 years ago
  
  cda3b3dc
- corrected store method · c278f330
  Graham McVicker authored 21 years ago
  
  c278f330
- desc -> description · 8df7b8dc
  Graham McVicker authored 21 years ago
  
  8df7b8dc
- updated PODs · dcbea868
  Graham McVicker authored 21 years ago
  
  dcbea868
- avoid a couple of perl warnings · ed8911ac
  Graham McVicker authored 21 years ago
  
  ed8911ac
- removed not null from attrib_type.description · 2d0126d1
  Arne Stabenau authored 21 years ago
  
  2d0126d1
- desc -> description · 64d9f04f
  Graham McVicker authored 21 years ago
  
  64d9f04f
- added tests for store method · 578fb61a
  Graham McVicker authored 21 years ago
  
  578fb61a
- The preload configured database is now automatically created if it doesnt exist on test host · 9f31585a
  Arne Stabenau authored 21 years ago
  
  9f31585a
- fixed errors in the store method · cfca09e6
  Graham McVicker authored 21 years ago
  
  cfca09e6