Commits · 233ebdb0cd44a6be1c9b2eb5b1b1cc90275ce800 · ensembl-gh-mirror / ensembl

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Apr 11, 2005
- table gene description removed (included in gene). New columns for gene and transcript. · 233ebdb0
  Arne Stabenau authored 20 years ago
  
  233ebdb0
- Updated for release 31. Added reguatory features etc. · 75059b84
  Glenn Proctor authored 20 years ago
  
  75059b84
- Properly assign XM & XP accessions to RefSeq_dna_predicted & RefSeq_peptide_predicted sources. · 9a3dba2c
  Glenn Proctor authored 20 years ago
  
  9a3dba2c
- .. and put it back on the head. · 66a36bc3
  Glenn Proctor authored 20 years ago
  
  66a36bc3
- Removed some functionality that should not have been in branch 30 · d9583c70
  Glenn Proctor authored 20 years ago
  
  d9583c70
Apr 08, 2005
- connection dropped fix by using dbadaptors etc which has already checks connections etc. · fbb0ee9f
  Ian Longden authored 20 years ago
  
  fbb0ee9f
- commented out locuslink and OMIM as these are not used now. Removed Wormbase... · 14f8ef97
  Ian Longden authored 20 years ago
  14f8ef97
- allow isa check also. Xref system uses a dbadptor as base class so has a... · 8ef3040c
  Ian Longden authored 20 years ago
  8ef3040c
- Added RefSeq_dna_predicted & RefSeq_peptide_predicted · 0e9630d4
  Glenn Proctor authored 20 years ago
  
  0e9630d4
- Fixed typo · 66603ea3
  Glenn Proctor authored 20 years ago
  
  66603ea3
- Added RefSeq_peptide_predicted and RefSeq_dna_predicted (as type 'PRED') to... · e73cf0f7
  Glenn Proctor authored 20 years ago
  e73cf0f7
Apr 06, 2005
- reconnect before parsing. · c486a480
  Ian Longden authored 20 years ago
  
  c486a480
- Dump all xrefs not just human/mouse · 88191c9d
  Ian Longden authored 20 years ago
  
  88191c9d
- Comment out deletion of motifs · aab7a5f3
  Glenn Proctor authored 20 years ago
  
  aab7a5f3
- Allow specification of motif ID · 6885385c
  Glenn Proctor authored 20 years ago
  
  6885385c
- Typo · b4cb70eb
  Glenn Proctor authored 20 years ago
  
  b4cb70eb
Apr 05, 2005
- Added transcript_supporting_feature table · 31763196
  Stephen Searle authored 20 years ago
  
  31763196
- Allow 7 args as well as 6 in map · 59eebac6
  Stephen Searle authored 20 years ago
  
  59eebac6
- Added supporting feature lazy loading · 17c888b4
  Stephen Searle authored 20 years ago
  
  17c888b4
- New adaptor for transcript supporting features · 0dde70c8
  Stephen Searle authored 20 years ago
  
  0dde70c8
- Added supporting feature store · 39a0fdff
  Stephen Searle authored 20 years ago
  
  39a0fdff
- Added TranscriptSupportingFeatureAdaptor · 2dd5aed8
  Stephen Searle authored 20 years ago
  
  2dd5aed8
- Changed from using toplevel to chromosome coordinate systems · c744b912
  Stephen Searle authored 20 years ago
  
  c744b912
Apr 04, 2005
- Script to load regulatory feature data (e.g. micro-RNA) into core db. · 9623b6e0
  Glenn Proctor authored 20 years ago
  
  9623b6e0
- honeybee and seasquirt initial data added · e5b841b7
  Ian Longden authored 20 years ago
  
  e5b841b7
- Added searching for unlinked transcripts to deal with alternaltive UTRs in elegans. · efe1fee8
  Glenn Proctor authored 20 years ago
  
  efe1fee8
- Simplified since we're now using direct xrefs for elegans rather than mapping. · d9d39b5e
  Glenn Proctor authored 20 years ago
  
  d9d39b5e
- *** empty log message *** · ff515ef8
  Glenn Proctor authored 20 years ago
  
  ff515ef8
Apr 01, 2005
- Refactoring to allow easier overriding of gene & transcript display_xref setting in subclasses. · 92a229b9
  Glenn Proctor authored 20 years ago
  92a229b9
- Added elegans-specific gene & transcript display_xref setting. · 3ab99939
  Glenn Proctor authored 20 years ago
  
  3ab99939
- Created; create xrefs & direct_xrefs from stable IDs for WormBase-imported... · 43687763
  Glenn Proctor authored 20 years ago
  43687763
- Created; base class for parsers that connect to databases. · 28a00b37
  Glenn Proctor authored 20 years ago
  
  28a00b37
- Added source for elegans that uses WormbaseDatabseStableIDParser. · 6544e72d
  Glenn Proctor authored 20 years ago
  
  6544e72d
- Added support for parsing from databases (rather than files). · 4573a115
  Glenn Proctor authored 20 years ago
  
  4573a115
- *** empty log message *** · fcf39ea9
  Glenn Proctor authored 20 years ago
  
  fcf39ea9
- better handlers archive stable ids · bac4579b
  Web Admin authored 20 years ago
  
  bac4579b
- Typo. · 7879f0e8
  Glenn Proctor authored 20 years ago
  
  7879f0e8
Mar 31, 2005
- Implemented store method for Marker objects in MarkerAdaptor, and added... · 2e126863
  Will Spooner authored 20 years ago
  2e126863
- Removed wormbase info as this will now be obtained only from the wormbase file · ce5aa54a
  Ian Longden authored 20 years ago
  
  ce5aa54a
Mar 30, 2005
- allow for undef returned as mapper from AssemblyMapperAdaptor · 3eacfbc0
  Arne Stabenau authored 20 years ago
  
  3eacfbc0