Commits · 263440bb55a3ccd604a0aea92dac98eb800e6fe4 · ensembl-gh-mirror / ensembl · GitLab

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 08, 2023.

10 Feb, 2011 13 commits
- Remove field display_label_linkable · 263440bb
  Monika Komorowska authored Feb 10, 2011
  
  263440bb
- Remove field display_id_linkable and related methods patch_61_62_d · 6ac0e10d
  Monika Komorowska authored Feb 10, 2011
  
  6ac0e10d
- Remove field display_label_linkable patch_61_62_d · 8629179c
  Monika Komorowska authored Feb 10, 2011
  
  8629179c
- RENAMED table.sql TO tables.sql · 7206d34b
  Andreas Kusalananda Kähäri authored Feb 10, 2011
  
  7206d34b
- Updated. · 6d148138
  Andreas Kusalananda Kähäri authored Feb 10, 2011
  
  6d148138
- Change one instance of 'goslim_goa' into 'goslim_generic'. · d1ac51fe
  Andreas Kusalananda Kähäri authored Feb 10, 2011
  
  d1ac51fe
- Add another example to fetch_all_by_name(). · 3df039d4
  Andreas Kusalananda Kähäri authored Feb 10, 2011
  
  3df039d4
- Count synonyms written. · 2691614a
  Andreas Kusalananda Kähäri authored Feb 10, 2011
```
Slight changes to output.
```
  2691614a
- The SO ontology URL changed (temporarily). · f7a0e7bc
  Andreas Kusalananda Kähäri authored Feb 10, 2011
  
  f7a0e7bc
- Fix typo. · e732423c
  Andreas Kusalananda Kähäri authored Feb 10, 2011
  
  e732423c
- Add indexes on synonym.name and on term.name for the benefit of · 325f5609
  Andreas Kusalananda Kähäri authored Feb 10, 2011
```
OntologyTermAdaptor::fetch_by_name().
```
  325f5609
- Fix typo. · 62b8e507
  Andreas Kusalananda Kähäri authored Feb 10, 2011
  
  62b8e507
- Remove accidentally re-added new() and ontology() methods. · d1f1115b
  Andreas Kusalananda Kähäri authored Feb 10, 2011
```
Make fetch_by_name() take an optional second argument (ontology name).

Make fetch_by_name() also look at synonyms.
```
  d1f1115b
09 Feb, 2011 9 commits
- Add code to parse and store synonyms from the OBO file. · 8753ad8b
  Andreas Kusalananda Kähäri authored Feb 09, 2011
```
Also only get term definitions from within "...".
```
  8753ad8b
- Added patch_61_61_d · 39877f97
  Monika Komorowska authored Feb 09, 2011
  
  39877f97
- Remove mentionings of "truncate". · 2320cc74
  Andreas Kusalananda Kähäri authored Feb 09, 2011
```
We assume we're running on fresh database.
```
  2320cc74
- Add synonym table to hold term synonyms. · e0435792
  Andreas Kusalananda Kähäri authored Feb 09, 2011
  
  e0435792
- fetch_all_by_name - oops fixed typos · f67176f1
  Nathan Johnson authored Feb 09, 2011
  
  f67176f1
- fetch_all_by_name - Replaced fuzzy matching logic with simple like · afc25421
  Nathan Johnson authored Feb 09, 2011
  
  afc25421
- Remove field 'display_label_linkable' from 'external_db' table. · 76b92b4a
  Monika Komorowska authored Feb 09, 2011
  
  76b92b4a
- Added fetch_all_by_name with fuzzy matching · de54045d
  Nathan Johnson authored Feb 09, 2011
  
  de54045d
- table.sql cleanup · aa9d251e
  Monika Komorowska authored Feb 09, 2011
  
  aa9d251e
08 Feb, 2011 6 commits
- Changes for patches 61_62_a,b,c · fa66e41a
  Monika Komorowska authored Feb 08, 2011
  
  fa66e41a
- Patch file patch_61_62_c.sql adds unique index to db_name field in external_db table. · 37f638cf
  Monika Komorowska authored Feb 08, 2011
  
  37f638cf
- Patch file patch_61_62_b.sql, extends field synonym in external_synonym table to 100 chars. · 9537ddc8
  Monika Komorowska authored Feb 08, 2011
  
  9537ddc8
- Adding patch for new schema release · 3eec4d74
  Monika Komorowska authored Feb 08, 2011
  
  3eec4d74
- All analysis logic_names should be lower case. · 0273c1cd
  Andreas Kusalananda Kähäri authored Feb 08, 2011
  
  0273c1cd
- analysis.logic_name should be lowercase. · 4eaa541c
  Andreas Kusalananda Kähäri authored Feb 08, 2011
  
  4eaa541c
07 Feb, 2011 1 commit
- Remove =pod markers and committer name. · f6b95137
  Andreas Kusalananda Kähäri authored Feb 07, 2011
```
Clean up example code (old code had unbalanced quotes and parens).
```
  f6b95137
04 Feb, 2011 3 commits
- minor changes · 22ba4a2f
  Graham Ritchie authored Feb 04, 2011
  
  22ba4a2f
- adding tests for Iterators · 8fe132b5
  Graham Ritchie authored Feb 04, 2011
  
  8fe132b5
- merge changes from branch 61 · f9cf86fd
  Simon Brent authored Feb 04, 2011
  
  f9cf86fd
03 Feb, 2011 2 commits
- Added an extra taxonomy id for S. cerevisiae as now EntrezGene for yeast is... · ec045f09
  Arnaud Kerhornou authored Feb 03, 2011
```
Added an extra taxonomy id for S. cerevisiae as now EntrezGene for yeast is attached to the strain level
```
  ec045f09
- Also check for EOF when scanning for end of term. · 29f2ee9d
  Andreas Kusalananda Kähäri authored Feb 03, 2011
  
  29f2ee9d
01 Feb, 2011 6 commits
- Change the PUBMED label for the VB species (uniformise) · b561f209
  Karyn Megy authored Feb 01, 2011
  
  b561f209
- Use true instead of 1. · 515cf01e
  Andreas Kusalananda Kähäri authored Feb 01, 2011
  
  515cf01e
- Add the four master table views that selects everything from the · 8bf8e02b
  Andreas Kusalananda Kähäri authored Feb 01, 2011
```
corresponding table for which is_current is 1.
```
  8bf8e02b
- Comment mod. · 7dbd3b09
  Andreas Kusalananda Kähäri authored Feb 01, 2011
  
  7dbd3b09
- Add documentation for the get_all_xrefs() method. · 5fa472ed
  Andreas Kusalananda Kähäri authored Feb 01, 2011
  
  5fa472ed
- Add documentation for the get_all_object_xrefs() method. · faf4fab3
  Andreas Kusalananda Kähäri authored Feb 01, 2011
  
  faf4fab3