Changed order of vega xrefs to check and added a test that the transcript has a logic_name of havana.

Changed order of vega xrefs to check and added a test that the transcript has a logic_name of havana, plus made sql easier to read.

to ens-staging2.

Change one instance of $dbport to $mport to connect to the right port
on the master server.

server port.

for a few releases but that I've ignored.

Parser to create an HTML documentation from the table.sql file.

Added SQL wildcard support to GeneAdaptor, TranscriptAdaptor and TranslationAdaptor -> fetch_all_by_external_name()
Actual modifications in DBEntryAdaptor. Features tested through gene.t

Backed out revision 1.217 as it causes an exception when trying to load a duplicate alias in case more than one database is used in a script for the same species when the species name is not specified.

production database.

text.