Commits · 2e87f0453f8cea83d2508e1394198df9a75e834b · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring failed 2 months ago.
Repository mirroring has been paused due to too many failed attempts. It can be resumed by a project maintainer or owner.
Last successful update 5 months ago.

Nov 21, 2007
- Added snlRNA. · 2e87f045
  Glenn Proctor authored 17 years ago
  
  2e87f045
- check existance of indels before replacing in list · 851656b0
  Daniel Rios authored 17 years ago
  
  851656b0
- Ontology added · 8bd63782
  Bronwen Aken authored 17 years ago
  
  8bd63782
Nov 20, 2007
- Change to name projections: *only* project HGNC names unless --all_sources is specified. · 50c4a860
  Glenn Proctor authored 17 years ago
  
  50c4a860
- remove seq caches if seq_edit attribute added · 0572ed8e
  Ian Longden authored 17 years ago
  
  0572ed8e
- remove seq caches if seq_edit attribute added · 44a4a5bc
  Ian Longden authored 17 years ago
  
  44a4a5bc
- remove seq caches if seq_edit attribute added · ff8c9b0c
  Ian Longden authored 17 years ago
  
  ff8c9b0c
- Added statistics for number of names projected from each source. · 71de25f7
  Glenn Proctor authored 17 years ago
  
  71de25f7
- HUGO -> HGNC · 509fa4b4
  Glenn Proctor authored 17 years ago
  
  509fa4b4
Nov 17, 2007
- tenrec == lesser hedgehog · 7810d3d4
  Glenn Proctor authored 17 years ago
  
  7810d3d4
Nov 16, 2007
- Changed default output directory to lustre/scratch1... from work1... · cfbb58de
  Glenn Proctor authored 17 years ago
```
Added more detail about healthchecks.
```
  cfbb58de
- Changed default output directory to lustre/scratch1... from work1... · 126257d0
  Glenn Proctor authored 17 years ago
  
  126257d0
- Slight change to cleanup SQL. · ffb6890c
  Glenn Proctor authored 17 years ago
  
  ffb6890c
- reverted erroneous efg imports to previous core versions · 41828928
  Nathan Johnson authored 17 years ago
  
  41828928
- Syntax fix to cleanup script. · a5f40172
  Glenn Proctor authored 17 years ago
  
  a5f40172
- Yet more aliases. · da7bffc5
  Glenn Proctor authored 17 years ago
  
  da7bffc5
- Added some more aliases. · b442f4b4
  Glenn Proctor authored 17 years ago
  
  b442f4b4
- Corrected some names. · 27dbee56
  Glenn Proctor authored 17 years ago
  
  27dbee56
- release -> db_release for MySQL 5 compatibility · 47d18696
  Glenn Proctor authored 17 years ago
  
  47d18696
- Run GO projections on long queue. · 5c0c74a4
  Glenn Proctor authored 17 years ago
  
  5c0c74a4
- Removed duplicate miRbase entry (10400). · 47640a3c
  Glenn Proctor authored 17 years ago
  
  47640a3c
- Added lots of sanity checking to track down formatting errors. · cc95264d
  Glenn Proctor authored 17 years ago
  
  cc95264d
- Corrected various problems caused by incomplete or badly-formatted lines. · 034681c2
  Glenn Proctor authored 17 years ago
  
  034681c2
- hybrigenics line had 3 fields missing. · e11ba8f4
  Glenn Proctor authored 17 years ago
  
  e11ba8f4
Nov 15, 2007
- simple script that creates the input file needed by CopyDBoverServer.pl - you... · 2592a55c
  Benoit Ballester authored 17 years ago
```
simple script that creates the input file needed by CopyDBoverServer.pl - you can use the -limit option  - very usefull when copying all core dbs across servers, such as staging to mart for instance
```
  2592a55c
- Added automatic cleanup. · bc0fbba7
  Glenn Proctor authored 17 years ago
  
  bc0fbba7
- Changed type of peptide_archive.md5_checksum from char to VARCHAR for consistency. · 880505d8
  Glenn Proctor authored 17 years ago
  
  880505d8
- Added pika and mouse lemur to name and GO term projection. · 7e1f5ad5
  Glenn Proctor authored 17 years ago
  
  7e1f5ad5
- Added some new species - culex, pike, anolis lizard, mouse lemur, orang utan. · 0f0b774a
  Glenn Proctor authored 17 years ago
  
  0f0b774a
Nov 14, 2007
- UPDATE existing analysis if it doesn't match the 'parameters'. · 40f37b1a
  Andreas Kusalananda Kähäri authored 17 years ago
  
  40f37b1a
- Use 'LOAD DATA LOCAL INFILE' rather than separate 'INSERT' statements to · cb5edcf3
  Andreas Kusalananda Kähäri authored 17 years ago
```
load the tables into the Core database.
```
  cb5edcf3
- pass argument to ignore release when storing DBEntry · bd38fb53
  Ian Longden authored 17 years ago
  
  bd38fb53
- A few more multiply 'my'ed scalars. · 2bd27d80
  Andreas Kusalananda Kähäri authored 17 years ago
  
  2bd27d80
- When creating a new 'analysis', properly insert NULLs. · 289bbf20
  Andreas Kusalananda Kähäri authored 17 years ago
  
  289bbf20
- Move some initializations closer to where they are actually used. · 66169ca0
  Andreas Kusalananda Kähäri authored 17 years ago
```
From code review:
  Get rid of "UCSC" in variable names (was actually dead code anyway).
  Change scoring function.
```
  66169ca0
- Scalars 'my'ed many times, fixed. · 3b3fe08f
  Andreas Kusalananda Kähäri authored 17 years ago
  
  3b3fe08f
Nov 13, 2007
- Wrong number of columns in object_xref table. · 8ffa8041
  Andreas Kusalananda Kähäri authored 17 years ago
  
  8ffa8041
- Add check to see that the lines that we're reading have as many columns · 7dd55d4c
  Andreas Kusalananda Kähäri authored 17 years ago
```
as we think it has before trying to INSERT them.

Correctly create an 'analysis' entry if one is missing.
```
  7dd55d4c
- Unbreak · 6e2bfb7e
  Andreas Kusalananda Kähäri authored 17 years ago
  
  6e2bfb7e
- Change apperance of some comments, add a few more in. · 3928baba
  Andreas Kusalananda Kähäri authored 17 years ago
  
  3928baba