Commits · 3245c16b397d2be1f05d8cf4d7c9bec1882a8ce1 · ensembl-gh-mirror / ensembl

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Jan 10, 2018
- use correct variables · 3245c16b
  Magali Ruffier authored 7 years ago
  
  3245c16b
- add some sanity checking · ca048906
  Magali Ruffier authored 7 years ago
  
  ca048906
Jan 09, 2018
- process xrefs in batches for lower memory · fb72efee
  Magali Ruffier authored 7 years ago
  
  fb72efee
- avoid caching dbi · 7b109afb
  Magali Ruffier authored 7 years ago
  
  7b109afb
Jan 08, 2018
- better tolerance for re-runs · 0952347c
  Magali Ruffier authored 7 years ago
  
  0952347c
- fixed typo · 4ad4c262
  Magali Ruffier authored 7 years ago
  
  4ad4c262
- upload xrefs file by file for less memory · d4d985dc
  Magali Ruffier authored 7 years ago
  
  d4d985dc
Jan 05, 2018
- use a single file for all HGNC parsing · 79cde873
  Magali Ruffier authored 7 years ago
  
  79cde873
- changed VGNC file location · ce5b0ef9
  Magali Ruffier authored 7 years ago
  
  ce5b0ef9
Jan 04, 2018
- use single file for all VGNC species · d43d80f5
  Magali Ruffier authored 7 years ago
  
  d43d80f5
Jan 03, 2018
- can work with dbadaptor argument · e78e709c
  Magali Ruffier authored 7 years ago
  
  e78e709c
- ccds is a core-like database · 89cc8bc2
  Magali Ruffier authored 7 years ago
  
  89cc8bc2
- Updates to fix soft_masking discripancy - ENSCORESW-2545 · 74e499ab
  premanand17 authored 7 years ago
  
  74e499ab
Jan 02, 2018
- Yearly copyright update for 2018 · a5780172
  premanand17 authored 7 years ago
  
  a5780172
Jan 01, 2018
- add generic sources for all vertebrates · 7e15c1a1
  Magali Ruffier authored 7 years ago
  
  7e15c1a1
- option upload not used · 2e1283ca
  Magali Ruffier authored 7 years ago
  
  2e1283ca
- skip incomplete RefSeq · 2dd9c546
  Magali Ruffier authored 7 years ago
  
  2dd9c546
- allow for re-runs · f8ce475f
  Magali Ruffier authored 7 years ago
  
  f8ce475f
- enable db_url parameter · 3aa7cba0
  Magali Ruffier authored 7 years ago
  
  3aa7cba0
Dec 22, 2017
- file can already be downloaded · 591ffe58
  Magali Ruffier authored 7 years ago
  
  591ffe58
- can read db from db_url option · f7658f8f
  Magali Ruffier authored 7 years ago
  
  f7658f8f
- allow missing version file · bd2ae0cf
  Magali Ruffier authored 7 years ago
  
  bd2ae0cf
- allow missig version file · ad22629b
  Magali Ruffier authored 7 years ago
  
  ad22629b
- add db_url option · 5502012b
  Magali Ruffier authored 7 years ago
  
  5502012b
Dec 06, 2017
- [ENSCORESW-2509 ]. skip() needs to know tests are in the block. · 444d2bdb
  Alessandro Vullo authored 7 years ago
  
  444d2bdb
- [ENSCORESW-2509 ]. Using MySQL specific syntax, hence skipping in case of other engines. · e4675e4f
  Alessandro Vullo authored 7 years ago
  
  e4675e4f
- Merge branch 'master' of https://github.com/Ensembl/ensembl · d8c3c18f
  Alessandro Vullo authored 7 years ago
  
  d8c3c18f
- [ENSCORESW-2509]. Check correct handling of collection DBs, create/destroy... · 6e15ee55
  Alessandro Vullo authored 7 years ago
```
[ENSCORESW-2509]. Check correct handling of collection DBs, create/destroy collection DBs along the process.
```
  6e15ee55
- Merge branch 'master' of https://github.com/Ensembl/ensembl · 49943ed5
  Magali Ruffier authored 7 years ago
  
  49943ed5
- remove unused queries · dc14a2f3
  Magali Ruffier authored 7 years ago
  
  dc14a2f3
- ensure fasta is parsed before GPFF · 50604fd8
  Magali Ruffier authored 7 years ago
  
  50604fd8
- ENSCORESW-2524 : add EntrezGene to mRNA as well · 97a1898c
  Magali Ruffier authored 7 years ago
  
  97a1898c
Dec 05, 2017
- Merge pull request #223 from ens-carlos/master · 3da8e692
  Alessandro Vullo authored 7 years ago
```
Throw if features array is empty and moved checks to the top.
```
  Unverified
  
  3da8e692
- Added missing ensembl align_type · 03b183ad
  ens-carlos authored 7 years ago
  
  Unverified
  
  03b183ad
- Add test for empty features array exception. · f44a273e
  ens-carlos authored 7 years ago
  
  Unverified
  
  f44a273e
- [ENSCORESW-2165 ]. Added extra parameter doc with example, with revised description of first one. · 8766efdb
  Alessandro Vullo authored 7 years ago
  
  8766efdb
- Merge pull request #224 from muffato/master · d315e0bd
  Alessandro Vullo authored 7 years ago
```
Added missing import
```
  Unverified
  
  d315e0bd
Dec 04, 2017
- include scaffolds for mapping · 506bf65b
  Magali Ruffier authored 7 years ago
  
  506bf65b
- ENSCORESW-2517 : only compare on same strand · 6cb294bd
  Magali Ruffier authored 7 years ago
  
  6cb294bd
Dec 01, 2017
- exhaustive check on non-conventional accessions · b52bcf34
  Magali Ruffier authored 7 years ago
  
  b52bcf34