Commits · 36da09d079c2c693b2c8f27f6e47c021227d7d73 · ensembl-gh-mirror / ensembl

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Aug 05, 2004
- get_all_db fix · 36da09d0
  Ian Longden authored 20 years ago
  
  36da09d0
- SNP fix · a56d25b8
  Ian Longden authored 20 years ago
  
  a56d25b8
Aug 04, 2004
- Updated perldoc in Bio::EnsEMBL::Registry to refer to Utils/ensembl_init.example · 31fc3ca2
  Abel Ureta-Vidal authored 20 years ago
  
  31fc3ca2
- Added ensembl_init.example for user Registry configuration · 9c0b78c2
  Abel Ureta-Vidal authored 20 years ago
  
  9c0b78c2
- add species to stop crashes · a7e72167
  Ian Longden authored 20 years ago
  
  a7e72167
- SNP fix · 7f0c8cfa
  Ian Longden authored 20 years ago
  
  7f0c8cfa
- get_ad and ad_db changed slightly · 3905af51
  Ian Longden authored 20 years ago
  
  3905af51
- In _bases_to_trim, initialised number of bases to trim. · cd217e6c
  Dan T Andrews authored 20 years ago
  
  cd217e6c
- removed deleteObj methods which were formerly called by the Container · 2a541cb4
  Graham McVicker authored 20 years ago
  
  2a541cb4
- added get _all_genotyped SNPs · f70f2c45
  Fiona Cunningham authored 20 years ago
  
  f70f2c45
Aug 03, 2004
- removed extra ->db in lines getting species and group · 6f8e9484
  Web Admin authored 20 years ago
  
  6f8e9484
- updated test count · 1b0dda41
  Graham McVicker authored 20 years ago
  
  1b0dda41
- added code for new display_label attribute of PredictionTranscripts · 7a20a5ca
  Graham McVicker authored 20 years ago
  
  7a20a5ca
- added POD for constructor · 2de7eb2c
  Graham McVicker authored 20 years ago
  
  2de7eb2c
- added display_label column to prediction_transcript table · f02bfea5
  Graham McVicker authored 20 years ago
  
  f02bfea5
- updated prediction transcript tests to check new display_label attribute · f5b0e360
  Graham McVicker authored 20 years ago
  
  f5b0e360
- get_all_Genes fixed · 9cb4eea0
  Ian Longden authored 20 years ago
  
  9cb4eea0
- updated test db prediction transcript table with new display_label column · c85e27ee
  Graham McVicker authored 20 years ago
  
  c85e27ee
- removed Chromosome, ChromosomeAdaptor, RawContig, RawContigAdaptor, Clone, CloneAdaptor modules · 262e9999
  Graham McVicker authored 20 years ago
  
  262e9999
- removed obsolete Protein and ProteinAdaptor modules · 01772475
  Graham McVicker authored 20 years ago
  
  01772475
- das feature cache clearer · e29ebcfb
  Web Admin authored 20 years ago
  
  e29ebcfb
- removed obsolete MapFrag/MapSet modules · 66274425
  Graham McVicker authored 20 years ago
  
  66274425
Aug 02, 2004
- added MetaContainer adaptor to load_hive · f88d0065
  Jessica Severin authored 20 years ago
  
  f88d0065
- removed obsolete Bio::EnsEMBL::Tile module · 70c11cf3
  Graham McVicker authored 20 years ago
  
  70c11cf3
- removed obsolete StickyExon module · 17009ada
  Graham McVicker authored 20 years ago
  
  17009ada
- obsolete · e5ecc2b8
  Graham McVicker authored 20 years ago
  
  e5ecc2b8
- removed Bio::EnsEMBL::Container module · b8d0c2db
  Graham McVicker authored 20 years ago
  
  b8d0c2db
- updated usage · c8c4d317
  Graham McVicker authored 20 years ago
  
  c8c4d317
- script to convert alignment feature coordinates to toplevel in a speedy way · 1243ad7b
  Graham McVicker authored 20 years ago
  
  1243ad7b
- deprecated messages changed · b859caaf
  Ian Longden authored 20 years ago
  
  b859caaf
- dbc needed for equals · 4f49f8e2
  Ian Longden authored 20 years ago
  
  4f49f8e2
- dnadb taken out of dbconnection · dbd88e32
  Ian Longden authored 20 years ago
  
  dbd88e32
- changed AnalysisAdaptor alias to just Analysis in load_compara · 8cfc4d03
  Jessica Severin authored 20 years ago
  
  8cfc4d03
Jul 30, 2004
- moving around of code elements for reg stuff · 008321d0
  Ian Longden authored 20 years ago
  
  008321d0
- number of test change · 277f5fc6
  Ian Longden authored 20 years ago
  
  277f5fc6
- Accommodated change of SWISSPROT and SPTREMBL to Uniprot/SWISSPROT and · 92a81fba
  Kevin Howe authored 20 years ago
```
Uniprot/SPTREMBL and added support for tetraodon. For what it's worth.
```
  92a81fba
- changed ID line format so that it is not too long in some cases · a1524b4e
  Graham McVicker authored 20 years ago
  
  a1524b4e
- DBAdaptor method db renamed dbc to stop confusion so all references to this have been changed · c8fcd6c2
  Ian Longden authored 20 years ago
  
  c8fcd6c2
Jul 29, 2004
- adjusted some tests to account for addition of mitochondrial chromosome to test db · 8aaaba21
  Graham McVicker authored 20 years ago
  
  8aaaba21
- Surprisingly, MultiTestDB.t test depends on number of rows in gene table. ... · 41b1d1c1
  Graham McVicker authored 20 years ago
```
Surprisingly, MultiTestDB.t test depends on number of rows in gene table.  Updated due to extra gene added to db.
```
  41b1d1c1