Commits · 4ecfe4abc6c8fefd61d8446903af21b796026cd8 · ensembl-gh-mirror / ensembl

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Feb 15, 2007
- Various tweaks; add job name, plus drosophila to anopheles GO projection · 4ecfe4ab
  Glenn Proctor authored 18 years ago
  
  4ecfe4ab
Feb 14, 2007
- The method fetch_by_Member() is deprecated in · bd9a914e
  Andreas Kusalananda Kähäri authored 18 years ago
```
Bio::EnsEMBL::Compara::DBSQL::HomologyAdaptor, changed to
fetch_all_by_Member().
```
  bd9a914e
- added get_all_VariationFeatures and get_original_seq_region_position for new web display · 346ff087
  Daniel Rios authored 18 years ago
  
  346ff087
Feb 13, 2007
- modified method get_all_Slices · c9f8ba63
  Daniel Rios authored 18 years ago
  
  c9f8ba63
- no longer used · 246cb5bd
  Patrick Meidl authored 18 years ago
  
  246cb5bd
- Added taxonomy xref in format required by EBI. · df7aba17
  Glenn Proctor authored 18 years ago
```
Added note about eb-eye email address.
```
  df7aba17
- no longer used · 09af27d9
  Patrick Meidl authored 18 years ago
  
  09af27d9
- moved from ensembl/misc-scripts/ · 75ad3d9a
  Patrick Meidl authored 18 years ago
  
  75ad3d9a
- moved to ensembl/misc-scripts/utilities/ · fdb3dc37
  Patrick Meidl authored 18 years ago
  
  fdb3dc37
- moved to ensembl/misc-scripts/db/ · 7515622c
  Patrick Meidl authored 18 years ago
  
  7515622c
- moved from ensembl/misc-scripts/test/ · 2b40073c
  Patrick Meidl authored 18 years ago
  
  2b40073c
- no longer used · eb54624f
  Patrick Meidl authored 18 years ago
  
  eb54624f
- give error message only once. · 8d1c0238
  Ian Longden authored 18 years ago
  
  8d1c0238
Feb 12, 2007
- added add_ProteinFeature, removed warning from get_all_ProteinFeatures · b0a82d44
  Patrick Meidl authored 18 years ago
  
  b0a82d44
- added test for add_ProteinFeature · 433c6544
  Patrick Meidl authored 18 years ago
  
  433c6544
- restore meta table after tests to prevent warning in other unit tests · c7ffc26b
  Patrick Meidl authored 18 years ago
  
  c7ffc26b
- moved from ensembl-personal/pm2/scripts/archive/find_stable_ids_in_archive2.pl · 275bbd7e
  Patrick Meidl authored 18 years ago
  
  275bbd7e
- Updated to use new database server instances. · 3fe42949
  Glenn Proctor authored 18 years ago
  
  3fe42949
- moved from ensembl/misc-scripts/archive/ · f57b9156
  Patrick Meidl authored 18 years ago
  
  f57b9156
- moved to ensembl/misc-scripts/id_mapping/ · 1bed5d3f
  Patrick Meidl authored 18 years ago
  
  1bed5d3f
- changed update function · 14197aa7
  Felix Kokocinski authored 18 years ago
  
  14197aa7
Feb 11, 2007
- Warn about db_names with - in as this (currently) breaks Mart. Can be removed... · 03bd4c59
  Glenn Proctor authored 18 years ago
```
Warn about db_names with - in as this (currently) breaks Mart. Can be removed when MartBuilder is live.
```
  03bd4c59
- Replace - with _ in IMGT* db_names to stop them breaking Mart · ca5f6c3a
  Glenn Proctor authored 18 years ago
  
  ca5f6c3a
Feb 09, 2007
- Added tests for store_mapping_path method · 745cea82
  Will Spooner authored 18 years ago
  
  745cea82
- Added store_mapping_path method to add assembly.mapping entries to the meta table · d755a1b3
  Will Spooner authored 18 years ago
  
  d755a1b3
- bugfix · eb1c4e56
  Felix Kokocinski authored 18 years ago
  
  eb1c4e56
- Meta-script to ease submitting of the various xref projections to the farm. · 65920b86
  Glenn Proctor authored 18 years ago
  
  65920b86
- Commented out unmapped_object.external_id as this is not required to be set... · 2466b3eb
  Glenn Proctor authored 18 years ago
```
Commented out unmapped_object.external_id as this is not required to be set for all types of unmapped objects.
```
  2466b3eb
- Default displayable to 0 (rather than undef) · 7262b877
  Glenn Proctor authored 18 years ago
  
  7262b877
Feb 08, 2007
- better store() test · ed3fcdb7
  Felix Kokocinski authored 18 years ago
  
  ed3fcdb7
- moved DAS fetching function into Storable so it can be reused · 9d1f8c76
  Eugene Kulesha authored 18 years ago
  
  9d1f8c76
- do not dump depenedent prioriy xrefs for pair data · e7e001c6
  Ian Longden authored 18 years ago
  
  e7e001c6
Feb 07, 2007
- Don't print non-error messages to STDERR · ab6b28f5
  Glenn Proctor authored 18 years ago
  
  ab6b28f5
- fixed TranscriptAdaptor and ExonAdaptor->remove() to properly deal with shared supporting features · ddadd524
  Patrick Meidl authored 18 years ago
  
  ddadd524
- Updated plan number. · de6c90c2
  Glenn Proctor authored 18 years ago
  
  de6c90c2
- Removed irrelevant old test · efa7f10a
  Glenn Proctor authored 18 years ago
  
  efa7f10a
- updated stable_id_event schema and test data · eb0c4e7f
  Patrick Meidl authored 18 years ago
  
  eb0c4e7f
- replaced deprecated method · 3a5089b5
  Patrick Meidl authored 18 years ago
  
  3a5089b5
- fetch_by_slice() to return relative coordinates · 2db39294
  Felix Kokocinski authored 18 years ago
  
  2db39294
Feb 06, 2007
- delte unmapped object where the type is xref now done automatically · 7a0b7d56
  Ian Longden authored 18 years ago
  
  7a0b7d56