Commits · 54f9923665ebf5a62e7f7e6164775394123490f0 · ensembl-gh-mirror / ensembl

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Aug 31, 2005
- changes from branch-vega-31-dev · 54f99236
  Patrick Meidl authored 19 years ago
  
  54f99236
Aug 26, 2005
- used new rearrange · f59f6a04
  Eugene Kulesha authored 19 years ago
  
  f59f6a04
Aug 23, 2005
- use GENES file now instead · f9b9ee3e
  Ian Longden authored 19 years ago
  
  f9b9ee3e
- bug in affy feature retrieval from database, too many features · a1dc0008
  Arne Stabenau authored 19 years ago
  
  a1dc0008
- Added cow · dd268ccf
  Kevin Howe authored 19 years ago
  
  dd268ccf
- Removed $self from call to Bio::EnsEMBL::Utils::Exception::throw in · ec881d7e
  Kevin Howe authored 19 years ago
```
deprecated throw
```
  ec881d7e
- replaced do with eval require for better error messages. Added optional... · 39e1e08d
  Ian Longden authored 19 years ago
```
replaced do with eval require for better error messages. Added optional argument to load_all to write to stderr what configuration file is being used. This was always reported before but defualt is now not to
```
  39e1e08d
Aug 22, 2005
- add synonym data fro mouse MGI data · 560a4acf
  Ian Longden authored 19 years ago
  
  560a4acf
- mouse synonyms added for MGI data · 67ddad9e
  Ian Longden authored 19 years ago
  
  67ddad9e
Aug 19, 2005
- check and fix if one external database source is associated with more than one ensembl object type · 895e5205
  Ian Longden authored 19 years ago
  
  895e5205
Aug 17, 2005
- use CORE::length not just length · a34402ab
  Ian Longden authored 19 years ago
  
  a34402ab
- Parser for cisRed database dumps · f526ab82
  Glenn Proctor authored 19 years ago
  
  f526ab82
- Parser for miRanda micro-RNA regualtory features · 3ab2e465
  Glenn Proctor authored 19 years ago
  
  3ab2e465
- Common functionality shared between parsers for different types of regulatory features · 9298716f
  Glenn Proctor authored 19 years ago
  
  9298716f
- New version, with modular parsers · 0d6dec38
  Glenn Proctor authored 19 years ago
  
  0d6dec38
- only get seq if seq object is not null. If null return an empty string · 35a3dc05
  Ian Longden authored 19 years ago
  
  35a3dc05
- Return undef if seq no sequence after stop codon removed · 1de1ea62
  Ian Longden authored 19 years ago
  
  1de1ea62
- Change display name for HUGO to "HGNC Symbol" · 102cbc20
  Glenn Proctor authored 19 years ago
  
  102cbc20
- module classified as stable, removed Bio:EnsEMBL::Root references · 1063f97b
  Ian Longden authored 19 years ago
  
  1063f97b
Aug 16, 2005
- SWISSPROT->Uniprot/SWISSPROT similar for trembl · f08cba0f
  Ian Longden authored 19 years ago
  
  f08cba0f
- dbEntry.txt fix · 3e16ffb7
  Ian Longden authored 19 years ago
  
  3e16ffb7
Aug 15, 2005
- SPTREMBL now Uniprot/SPTREMBL · d116a5d3
  Ian Longden authored 19 years ago
  
  d116a5d3
- external_db_id values changed · ad6713ec
  Ian Longden authored 19 years ago
  
  ad6713ec
- removed delete if exist bit which was casung problems · 1da9cf5c
  Ian Longden authored 19 years ago
  
  1da9cf5c
- Mapper methods basically all set to be stable. · cb07a114
  Ian Longden authored 19 years ago
  
  cb07a114
Aug 12, 2005
- status reports added plus some tiding up of docs. Two small sections still to be done · 8042c98b
  Ian Longden authored 19 years ago
  
  8042c98b
- status reports added plus some tiding up of docs · d1b8f7f5
  Ian Longden authored 19 years ago
  
  d1b8f7f5
- ALL methods now deprecated. This Module will be removed soon · e8af8aa2
  Ian Longden authored 19 years ago
  
  e8af8aa2
- check for arguments as all of Root.pm methods now deprecate to one of these method · 89f5d751
  Ian Longden authored 19 years ago
  
  89f5d751
Aug 11, 2005
- Bug fix to gene display_xref setting. · 1ecd6c11
  Glenn Proctor authored 19 years ago
  
  1ecd6c11
- Don't clobber ncRNA display_xrefs · 8150cd5c
  Glenn Proctor authored 19 years ago
  
  8150cd5c
Aug 09, 2005
- ciona_int_aniseed --> aniseed · 3319f854
  Jan-hinnerk Vogel authored 19 years ago
  
  3319f854
- db_names for ciona int aniseed and jgi changed · ec26e3c3
  Jan-hinnerk Vogel authored 19 years ago
  
  ec26e3c3
- if option -useexstingmapping is used, · 0de55c31
  Jan-hinnerk Vogel authored 19 years ago
```
sequence will not be dumped out now.
```
  0de55c31
- use rusage to make sure there is enough disk space. lsrcp now uses ecs2c as... · b5dba425
  Ian Longden authored 19 years ago
```
use rusage to make sure there is enough disk space. lsrcp now uses ecs2c as the host machine for coping etc to protect NFS. Make sure number of jobs is greater than 1 else arrays dont like it
```
  b5dba425
Aug 08, 2005
- Typo. · d6ebb9e4
  Craig Melsopp authored 19 years ago
  
  d6ebb9e4
- Added entry for microarray HC_G11. · 6adfab11
  Craig Melsopp authored 19 years ago
  
  6adfab11
- Added db_display_name for new affy arrays. · b88ce2af
  Craig Melsopp authored 19 years ago
  
  b88ce2af
- Added entries for new microarrays: HuGeneFL, DrosGenome1, Drosophila_2. · 7c8e35d9
  Craig Melsopp authored 19 years ago
  
  7c8e35d9
- Avoid deleting or overwriting ncRNA gene descriptions. · 1f8bcff2
  Glenn Proctor authored 19 years ago
  
  1f8bcff2