Commits · 5535c06d63a8073f86dcfa6da6dfc63b01154056 · ensembl-gh-mirror / ensembl

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Mar 09, 2006
- schema and API changes for archive stable id history · a5778a65
  Patrick Meidl authored 19 years ago
  
  a5778a65
Mar 06, 2006

Affy -> Oligo schema and API changes. · d1187a3c

Ian Sealy authored 19 years ago

Can now support oligonucleotide microarrays other than Affy.
The three affy_* tables are changed to oligo_* tables. New fields are:
  oligo_array.type (currently either AFFY or OLIGO)
  oligo_probe.length
  oligo_probe.description
The existing Affy objects become subclasses of new Oligo objects, but
the API is backwards compatible, so existing pipeline and Web code won't
need changing.

d1187a3c

Feb 23, 2006
- Added info_type and info_text to xref. · 1f63d134
  Glenn Proctor authored 19 years ago
  
  1f63d134
- Changed external_db.release to db_release, added info_type and info_text to xref · d145cb14
  Glenn Proctor authored 19 years ago
  
  d145cb14
Feb 21, 2006
- Merged branch-mysql5 back into HEAD · 199ec320
  Glenn Proctor authored 19 years ago
  
  199ec320
Feb 16, 2006
- UnmappedObject tests · 626355e5
  Ian Longden authored 19 years ago
  
  626355e5
- Unmapped object test data changed · 27c9b504
  Ian Longden authored 19 years ago
  
  27c9b504
Feb 14, 2006
- brought up-to-date with current schema and API · 64889c7e
  Patrick Meidl authored 19 years ago
  
  64889c7e
- changed Gene->type() to Gene->biotype() · b525d09a
  Patrick Meidl authored 19 years ago
  
  b525d09a
Feb 13, 2006
- Remove deprecation error. · a6d3a49b
  Glenn Proctor authored 19 years ago
  
  a6d3a49b
Feb 10, 2006
- type->biotype · 75f7d197
  Glenn Proctor authored 19 years ago
  
  75f7d197
Feb 07, 2006
- changed score to query_score and target_score for the unmapped object stuff · facf9cc6
  Ian Longden authored 19 years ago
  
  facf9cc6
Feb 06, 2006
- added unmapped_reason and unmapped_object data for test suite · d9973450
  Ian Longden authored 19 years ago
  
  d9973450
Jan 26, 2006
- Updated schema version in meta table to 37 · b7323c3f
  Glenn Proctor authored 19 years ago
  
  b7323c3f
- type->biotype · 9a1ad47f
  Glenn Proctor authored 19 years ago
  
  9a1ad47f
Dec 08, 2005
- gap transform test cases · 173904d1
  Arne Stabenau authored 19 years ago
  
  173904d1
- corrected test data for gap map genes · cde367bf
  Arne Stabenau authored 19 years ago
  
  cde367bf
Dec 06, 2005
- save the reg_feat_obj along the other table to keep it well save · 6ec40258
  Arne Stabenau authored 19 years ago
  
  6ec40258
- rogue regulatory_feature_object line removed. · 67c5d331
  Arne Stabenau authored 19 years ago
  
  67c5d331
Dec 05, 2005
- updated test genome with new index on density_type and some test data for gapped gene transforms · 2b427cd8
  Arne Stabenau authored 19 years ago
  
  2b427cd8
- updated test count · 6e340b30
  Arne Stabenau authored 19 years ago
  
  6e340b30
- wrong test number · 5a21437b
  Arne Stabenau authored 19 years ago
  
  5a21437b
- analysis test modified analysis_description table · f0e538c8
  Arne Stabenau authored 19 years ago
  
  f0e538c8
Nov 29, 2005
- Fix to stop rest of tests failing if gene not returned at line 44 · 97cea85c
  Glenn Proctor authored 19 years ago
  
  97cea85c
- Fixed test - trying to store a string in an int column. · a07a5c19
  Glenn Proctor authored 19 years ago
  
  a07a5c19
- Removed debug. · ad15081e
  Glenn Proctor authored 19 years ago
  
  ad15081e
- Remove duplicated variable. · 866f16e5
  Glenn Proctor authored 19 years ago
  
  866f16e5
- Fix test count. · 7d892d9d
  Glenn Proctor authored 19 years ago
  
  7d892d9d
- Fix fetch_by_external_name · 858c4e5d
  Glenn Proctor authored 19 years ago
  
  858c4e5d
Nov 28, 2005
- Correct test count. · 69cdd71b
  Glenn Proctor authored 19 years ago
  
  69cdd71b
- Fix duplicate variable. · 038a57a3
  Glenn Proctor authored 19 years ago
  
  038a57a3
Nov 21, 2005
- changed retrieval of densities · 5aec84b9
  Arne Stabenau authored 19 years ago
  
  5aec84b9
Nov 14, 2005
- removed verbose output, adpted test count · be6799da
  Arne Stabenau authored 19 years ago
  
  be6799da
- updated schema in test database · f838ab70
  Arne Stabenau authored 19 years ago
  
  f838ab70
- density type should now support features per seq_region via the region_features attribute · 99fd531f
  Arne Stabenau authored 19 years ago
  
  99fd531f
Nov 09, 2005
- Tests for ensembl_object() · 6341378e
  Glenn Proctor authored 19 years ago
  
  6341378e
Nov 08, 2005
- *** empty log message *** · 54fb4aea
  Glenn Proctor authored 19 years ago
  
  54fb4aea
- Tests for RegulatoryFeatureAdaptor. · d970667d
  Glenn Proctor authored 19 years ago
  
  d970667d
- Added cisred analyses · c0474584
  Glenn Proctor authored 19 years ago
  
  c0474584
- Seq region fix · 818bcb71
  Glenn Proctor authored 19 years ago
  
  818bcb71