Commits · 581c5e757b503cd5fc12865d045b8341362825e8 · ensembl-gh-mirror / ensembl

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Jun 10, 2004
- renamed to vega_gene_density.pl · 581c5e75
  Patrick Meidl authored 20 years ago
  
  581c5e75
- Last wrong branch fixcvs up -r 1.7 -p ProxyAdaptor.pm > ProxyAdaptor.pm · 7461f90c
  Ian Longden authored 20 years ago
  
  7461f90c
- Opps reverting back to previous version as i mean't to commit on the branch not here · d22e7d6e
  Ian Longden authored 20 years ago
  
  d22e7d6e
- Opps reverting back to prvious version as i mean't to commit on the brach not here · 26e6df85
  Ian Longden authored 20 years ago
  
  26e6df85
Jun 09, 2004
- Registry changes · aaba1dc1
  Ian Longden authored 20 years ago
  
  aaba1dc1
- exon has no p_value method so remove calls to thisxemacs TranscriptFactory.pm &! · 6486bfbc
  Ian Longden authored 20 years ago
  
  6486bfbc
- Sets HSP chr fileds to NULL when searches are removed to avoid contamination... · 154de031
  Will Spooner authored 20 years ago
```
Sets HSP chr fileds to NULL when searches are removed to avoid contamination with subsequent searches (e.g. in contigview)
```
  154de031
- added glovar SNP stats · d528572a
  Patrick Meidl authored 20 years ago
  
  d528572a
- glovar SNP density and stats script · 783bd998
  Patrick Meidl authored 20 years ago
  
  783bd998
- added the use for Exon, Translation and Transcript. · d50d525a
  Ian Longden authored 20 years ago
  
  d50d525a
- Removed unnecessary warning · d0789c26
  Graham McVicker authored 20 years ago
  
  d0789c26
- fixed test to reflect fact that seqedits are not currently enabled by default · 25c1dcfb
  Graham McVicker authored 20 years ago
  
  25c1dcfb
Jun 08, 2004
- Fixed documentation bug · 41e53dbb
  Jan-hinnerk Vogel authored 20 years ago
  
  41e53dbb
- branch to head · bc94e017
  Web Admin authored 20 years ago
  
  bc94e017
Jun 07, 2004
- get less Transcripts in fetch_all_by_Slice · 4b69737a
  Arne Stabenau authored 20 years ago
  
  4b69737a
Jun 02, 2004
- *** empty log message *** · f9ef546e
  Web Admin authored 20 years ago
  
  f9ef546e
- fixed bug in add_ExternalFeatureAdaptor() · 3795367e
  Patrick Meidl authored 20 years ago
  
  3795367e
- Fixed typo in get_all_DASFeatures · d5ffd29a
  Will Spooner authored 20 years ago
  
  d5ffd29a
Jun 01, 2004
- Added support for fugu (transferred changes from branch 19) · 1bc699b6
  Kevin Howe authored 20 years ago
  
  1bc699b6
May 27, 2004
- fetch_Featureset_by_Slice() now caches results · 6f6f334c
  Patrick Meidl authored 20 years ago
  
  6f6f334c
- Added adaptor/dbID test to get_DBEntries call · 94514a1d
  Will Spooner authored 20 years ago
  
  94514a1d
May 26, 2004
- Sequence Caching was unintentionally disabled · 0adfb533
  Graham McVicker authored 20 years ago
  
  0adfb533
- do not do translation modification if transcript edits are disabled · 96681820
  Graham McVicker authored 20 years ago
  
  96681820
- made translateable_seq() and translate() more careful about the possible absence of Translation · e4e065a5
  Graham McVicker authored 20 years ago
  
  e4e065a5
- changed POD: edits are disabled by default right now · 949abb12
  Graham McVicker authored 20 years ago
  
  949abb12
- added test for new Translation::fetch_all_by_Transcript_list method · a9cadf5c
  Graham McVicker authored 20 years ago
  
  a9cadf5c
- load all Translations at once if immediate loading is specified - slightly faster · 5356af43
  Graham McVicker authored 20 years ago
  
  5356af43
- changed fetch_all_by_Slice to allow immediate loading of exons rather than lazy-loading · 82ccd739
  Graham McVicker authored 20 years ago
  
  82ccd739
- POD changes · e30e41d0
  Graham McVicker authored 20 years ago
  
  e30e41d0
- changed incorrect PODs · 05a16d92
  Graham McVicker authored 20 years ago
  
  05a16d92
- removed superfluous if statement · 2b407be2
  Graham McVicker authored 20 years ago
  
  2b407be2
May 25, 2004
- added immediate loading of PredictionExons option to PredictionTranscript... · 5105e19f
  Graham McVicker authored 20 years ago
```
added immediate loading of PredictionExons option to PredictionTranscript slice fetching; faster than lazy-loading for many use cases
```
  5105e19f
- Standardised fasta headers · a18dade3
  Will Spooner authored 20 years ago
  
  a18dade3
- use non-lazy-loaded genes for faster performance · e12f72ef
  Graham McVicker authored 20 years ago
  
  e12f72ef
- added optimisation: Transcripts and Exons can now be loaded immediately on... · acea98ea
  Graham McVicker authored 20 years ago
```
added optimisation: Transcripts and Exons can now be loaded immediately on Gene fetch rather than lazy-loading later
```
  acea98ea
- * bug fix: non-zero start phase padding should occur AFTER UTR trimming · d1f6562d
  Graham McVicker authored 20 years ago
  
  d1f6562d
- bug fix: Translation start_exon and end_exon for PredictionTranscripts should... · 7b2619e3
  Graham McVicker authored 20 years ago
```
bug fix: Translation start_exon and end_exon for PredictionTranscripts should not have been strand dependant
```
  7b2619e3
- added transcript_attrib and translation_attrib tables · 9f9afa68
  Steve Trevanion authored 20 years ago
  
  9f9afa68
May 24, 2004
- transcript fetching optimisations, allows optional immediate exon loading as... · be06192b
  Graham McVicker authored 20 years ago
```
transcript fetching optimisations, allows optional immediate exon loading as opposed to lazy-loading
```
  be06192b
- small typo change · 8678747f
  Steve Trevanion authored 20 years ago
  
  8678747f