Commits · 591ffe583776c6d8314fc443455c842271eea19c · ensembl-gh-mirror / ensembl

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Dec 22, 2017
- file can already be downloaded · 591ffe58
  Magali Ruffier authored 7 years ago
  
  591ffe58
- can read db from db_url option · f7658f8f
  Magali Ruffier authored 7 years ago
  
  f7658f8f
- allow missing version file · bd2ae0cf
  Magali Ruffier authored 7 years ago
  
  bd2ae0cf
- allow missig version file · ad22629b
  Magali Ruffier authored 7 years ago
  
  ad22629b
- add db_url option · 5502012b
  Magali Ruffier authored 7 years ago
  
  5502012b
Dec 06, 2017
- [ENSCORESW-2509 ]. skip() needs to know tests are in the block. · 444d2bdb
  Alessandro Vullo authored 7 years ago
  
  444d2bdb
- [ENSCORESW-2509 ]. Using MySQL specific syntax, hence skipping in case of other engines. · e4675e4f
  Alessandro Vullo authored 7 years ago
  
  e4675e4f
- Merge branch 'master' of https://github.com/Ensembl/ensembl · d8c3c18f
  Alessandro Vullo authored 7 years ago
  
  d8c3c18f
- [ENSCORESW-2509]. Check correct handling of collection DBs, create/destroy... · 6e15ee55
  Alessandro Vullo authored 7 years ago
```
[ENSCORESW-2509]. Check correct handling of collection DBs, create/destroy collection DBs along the process.
```
  6e15ee55
- Merge branch 'master' of https://github.com/Ensembl/ensembl · 49943ed5
  Magali Ruffier authored 7 years ago
  
  49943ed5
- remove unused queries · dc14a2f3
  Magali Ruffier authored 7 years ago
  
  dc14a2f3
- ensure fasta is parsed before GPFF · 50604fd8
  Magali Ruffier authored 7 years ago
  
  50604fd8
- ENSCORESW-2524 : add EntrezGene to mRNA as well · 97a1898c
  Magali Ruffier authored 7 years ago
  
  97a1898c
Dec 05, 2017
- Merge pull request #223 from ens-carlos/master · 3da8e692
  Alessandro Vullo authored 7 years ago
```
Throw if features array is empty and moved checks to the top.
```
  Unverified
  
  3da8e692
- Added missing ensembl align_type · 03b183ad
  ens-carlos authored 7 years ago
  
  Unverified
  
  03b183ad
- Add test for empty features array exception. · f44a273e
  ens-carlos authored 7 years ago
  
  Unverified
  
  f44a273e
- [ENSCORESW-2165 ]. Added extra parameter doc with example, with revised description of first one. · 8766efdb
  Alessandro Vullo authored 7 years ago
  
  8766efdb
- Merge pull request #224 from muffato/master · d315e0bd
  Alessandro Vullo authored 7 years ago
```
Added missing import
```
  Unverified
  
  d315e0bd
Dec 04, 2017
- include scaffolds for mapping · 506bf65b
  Magali Ruffier authored 7 years ago
  
  506bf65b
- ENSCORESW-2517 : only compare on same strand · 6cb294bd
  Magali Ruffier authored 7 years ago
  
  6cb294bd
Dec 01, 2017
- exhaustive check on non-conventional accessions · b52bcf34
  Magali Ruffier authored 7 years ago
  
  b52bcf34
- Update BaseAlignFeature.pm · 34931829
  ens-carlos authored 7 years ago
  
  Unverified
  
  34931829
Nov 30, 2017
- Added missing import · f1901c29
  Matthieu Muffato authored 7 years ago
  
  f1901c29
- remove Vega related xref sources · d2b05e66
  Magali Ruffier authored 7 years ago
  
  d2b05e66
- Throw if features array is empty and moved checks to the top. · 422ebc59
  ens-carlos authored 7 years ago
  
  Unverified
  
  422ebc59
Nov 27, 2017
- [ENSCORESW-844 ]. Test names associated to mapped coordinates (seq region names). · 69dc7009
  Alessandro Vullo authored 7 years ago
  
  69dc7009
- [ENSCORESW-844 ]. Test mapped coordinate names for ChainedAssemblyMapper. · 0cba39a9
  Alessandro Vullo authored 7 years ago
  
  0cba39a9
- [ENSCORESW-844 ]. Test mapped coordinate names for TopLevelAssemblyMapper. · 36006e59
  Alessandro Vullo authored 7 years ago
  
  36006e59
- [ENSCORESW-844 ]. Mapper decorates returned coordinates with the corresponding seq region names. · 9e75d96a
  Alessandro Vullo authored 7 years ago
  
  9e75d96a
- [ENSCORESW-844 ]. Method to get/set the coordinate (seq region) name. · 710069ca
  Alessandro Vullo authored 7 years ago
  
  710069ca
Nov 23, 2017

[]. Somehow (difficult to find exactly where) output is emitted... · 0d407824

Alessandro Vullo authored 7 years ago

[ENSCORESW-2508]. Somehow (difficult to find exactly where) output is emitted without newline at the end, which is
then attached the result of the test, e.g. [last line of output]ok 17 ...
TAP fails because the parsed output is expecting the ok/not ok string at the beginning of the line.

0d407824

Nov 21, 2017
- Merge branch 'master' of https://github.com/Ensembl/ensembl · 18ee7423
  Alessandro Vullo authored 7 years ago
  
  18ee7423
- Correct coordinate system variable names, based on the example. · 04772812
  Alessandro Vullo authored 7 years ago
  
  04772812
Nov 10, 2017
- Merge pull request #220 from muffato/master · d8f9d923
  Matthew Laird authored 7 years ago
```
bugfix: not all users require a password
```
  Unverified
  
  d8f9d923
Nov 09, 2017
- Made the script executable · 5e9c140c
  Matthieu Muffato authored 7 years ago
  
  5e9c140c
Nov 07, 2017
- ENSCORESW-2485 : do not delete all possible mappings · 4230f581
  Magali Ruffier authored 7 years ago
  
  4230f581
Nov 06, 2017
- Merge branch 'master' of https://github.com/Ensembl/ensembl · 81be9bbb
  Magali Ruffier authored 7 years ago
  
  81be9bbb
Nov 03, 2017
- keep old mappings, always create new entry · b0ec73eb
  Magali Ruffier authored 7 years ago
  
  b0ec73eb
- capture mRNA for peptide information · 980bdb4d
  Magali Ruffier authored 7 years ago
  
  980bdb4d
- keep failed_cutoff to store alignment scores · d7ee7de6
  Magali Ruffier authored 7 years ago
  
  d7ee7de6