Commits · 5b8bd2bd4e77bcfca4b72ed7f9f4b235d9afa8a3 · ensembl-gh-mirror / ensembl

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Jul 17, 2008
- changed to fetch regulatory feature from FuncG database as well · 5b8bd2bd
  Yuan Chen authored 16 years ago
  
  5b8bd2bd
Jul 16, 2008
- added newline for neatness · 345dc9c1
  Ian Longden authored 16 years ago
  
  345dc9c1
- use the new source names · 6e644f41
  Ian Longden authored 16 years ago
  
  6e644f41
- added stats after each parser · 8aa76dc3
  Ian Longden authored 16 years ago
  
  8aa76dc3
- fix for attribute seq edits · d169fd59
  Ian Longden authored 16 years ago
  
  d169fd59
- Sybase driver option added provided by spiridou from illumina · 346a350f
  Ian Longden authored 16 years ago
  
  346a350f
- linkage_type added · 189ab7d6
  Ian Longden authored 16 years ago
  
  189ab7d6
- canonical transcript now added to gene · a6ae5010
  Ian Longden authored 16 years ago
  
  a6ae5010
- release 50 now · 887fd796
  Ian Longden authored 16 years ago
  
  887fd796
- new tables · 728c16a1
  Ian Longden authored 16 years ago
  
  728c16a1
Jul 15, 2008
- Ick, remove very old code. · b14f14b8
  Andreas Kusalananda Kähäri authored 16 years ago
```
Something went wrong here.  This file was removed by Arek 7 years ago...
```
  b14f14b8
- merge from 49 · e7447d5a
  Stephen Keenan authored 16 years ago
  
  e7447d5a
Jul 14, 2008
- removed duplication initialization variable · 345230a8
  Daniel Rios authored 16 years ago
  
  345230a8
Jul 11, 2008
- ; at end of GetOptions changed to , · 2ecfb772
  Susan Fairley authored 16 years ago
  
  2ecfb772
Jul 10, 2008
- modified to allow mapping between external and internal seq_region_ids · db0a3394
  Daniel Rios authored 16 years ago
  
  db0a3394
- code to get LRG from database and store in a MappedSliceContainer · 7ed68160
  Daniel Rios authored 16 years ago
  
  7ed68160
- script to populate the seq_region_mapping and mapping_set tables to allow user upload data · b365a33e
  Daniel Rios authored 16 years ago
  
  b365a33e
- new tables to handle user upload data · ff3d42d6
  Daniel Rios authored 16 years ago
  
  ff3d42d6
- typo · 696e6fc6
  Steve Trevanion authored 16 years ago
  
  696e6fc6
Jul 09, 2008
- external_dbs.txt · 3c7eae13
  Julio Fernandez Banet authored 16 years ago
  
  3c7eae13
Jul 07, 2008
- added support for user uploaded data into a core schema db · 70800901
  Eugene Kulesha authored 16 years ago
  
  70800901
- New descriptions for the share_CDS entries used in the Ensembl/HAVANA merge · 95d299f0
  Julio Fernandez Banet authored 16 years ago
  
  95d299f0
- added save function to store the user uploaded feature in a db · 330a8bb3
  Eugene Kulesha authored 16 years ago
  
  330a8bb3
- added _pre_store_userdata, remove_bby_analysis_id and remove_by_feature_id... · a0d4cd5c
  Eugene Kulesha authored 16 years ago
```
added _pre_store_userdata, remove_bby_analysis_id and remove_by_feature_id functions for user uploads
```
  a0d4cd5c
- insert analysis description even if created is set · 4a576402
  Eugene Kulesha authored 16 years ago
  
  4a576402
Jul 03, 2008
- Make HGNC_{curated|automatic}_gene obejct xrefs go to genes, likewise for the transcript ones. · 42b8055d
  Glenn Proctor authored 16 years ago
  
  42b8055d
Jul 02, 2008
- new havana naming · 84a6b940
  Ian Longden authored 16 years ago
  
  84a6b940
Jul 01, 2008
- Update the SYNOPSIS of some of the adaptors so that the example uses the · 11f84f47
  Andreas Kusalananda Kähäri authored 16 years ago
```
registry and not get_XXXAdaptor() explicitly.
```
  11f84f47
Jun 27, 2008
- DBAdaptor examples replaced with registry ones. This was confusing people on the API course · 79f41006
  Ian Longden authored 16 years ago
  
  79f41006
- method fetch_all_by_transcript_supporting_evidence fixed and new description added · 440d7c18
  Ian Longden authored 16 years ago
  
  440d7c18
Jun 24, 2008
- Add auto-load functionality for the Ancestral sequences DB · d4cbb607
  Javier Herrero authored 16 years ago
  
  d4cbb607
Jun 16, 2008
- added some more heuristics to external_db.db_name query · 48aa92b4
  Nathan Johnson authored 16 years ago
  
  48aa92b4
Jun 11, 2008
- An index on seq_region had the wrong name ('name' should have been · 3020b602
  Andreas Kusalananda Kähäri authored 16 years ago
```
'name_cs_idx').  The patch (patch_49_50_d.sql) is correct.
```
  3020b602
- Merge trivial patch from development branch. · 9a0be8ac
  Andreas Kusalananda Kähäri authored 16 years ago
  
  9a0be8ac
- Havana and Ig pseudogenes will all get attrib pseudo · f52bfafb
  Bronwen Aken authored 16 years ago
  
  f52bfafb
- wrapper around translation_attribs to parallel the translation_attribs calculation · 885ecba6
  Daniel Rios authored 16 years ago
  
  885ecba6
- added pattern as an option to calculate translation_attribs · 65b45675
  Daniel Rios authored 16 years ago
  
  65b45675
Jun 10, 2008
- Human biotypes have changed from eg. J_segment to IG_J_gene · e3a3bf9c
  Bronwen Aken authored 16 years ago
```
The script has been updated accordingly.
```
  e3a3bf9c
- Vega_transcript direct mapping to Ensembl transcripts parser · a9d4b5cf
  Ian Longden authored 16 years ago
  
  a9d4b5cf
- list what dependent xrefs have been added · 8d0fae2f
  Ian Longden authored 16 years ago
  
  8d0fae2f