GoXref have an added linkage_type for an Xref. Currently one of "computational", "experimentl" or "curated"

allow prediction transcripts to be computed in slice coords and transformed to raw contig coords - untested

updated get_all_compara_DnaAlignFeatures method that have now 2 arguments as consequence of compara schema change when storing Dna alignments

short script to get predicted sequence being potentially transposons or lying on bacterial contaminants