Anything in default_options() is not taken over to the pipeline by default. Pipeline wide parameters should be passed into the appropriate method to be set in meta

Switching the logic around a little bit here to get rid of single | or statements and an xor which I think has caused issues somewhere in our pipelines

when looping, if looking for previous_dbname, would always be defined because of the last loop, so comparing the wrong databases

default value is core, so running without specifying anything will be as before

Script to examine exons before and after projection. Designed to work with Anacode Support objects, so jiggery pokery with paths needed to get started. Use with arguments similar to the Assembly Mapping pipeline.

Needs more POD.

should be rnorvegicus, not rnovegicus