Use double-fork (not Open3) to communicate with LSF processes. More reliable and no quoting strangeness.

Corrected species IDs for (currently commented out) UniGene entries

increments this variable on every call to prepare and do methods

with the removal of all hugo transcript data (due to mart not allowing both transripts and translations, the script could not find transcript matches, which was presumed, so chnages now made to check if they exist first etc....    Also stopped dump_comparison from being called