Giving it more MySQL style options and allowing more options be configured from the config file such as username and password

Faster slurp. Cannot apply to gzip because the the handle isn't open right away and you can't ask for the size via -s if its not open

New test for veracity of FASTA Serializer class.  Tests custom headers and compares results for SeqDumper and FASTA Serializer.

Temporary fix to solve incorrect orientation of the HG1211_PATCH until either the file contains this information or we decide to do it another way

Module associated with the Broad Magnaporthe Comparative DB; inherits fro mthe generic broad parser, Broad_GenericParser.pm

Download release version from public FTP. Also do checks for the other Ensembl modules which isn't a total failure but can trip people up

changed deprecated fetch_by_MethodLinkSpeciesSet_DnaFrag to fetch_all_by_MethodLinkSpeciesSet_DnaFrag

Added a section which does checks to make sure we have the executables available & if not then use locate to find alternatives.