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- Apr 21, 2004
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
* store method will store display_xref if it is set
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Graham McVicker authored
* fetch methods correctly populate created display_xrefs now * store method will store display_xref if it is set
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Graham McVicker authored
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- Apr 20, 2004
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Graham McVicker authored
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- Apr 19, 2004
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Graham McVicker authored
Slice::project no longer forces projection to assembly_exception regions. Not sure why it did this.
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Abel Ureta-Vidal authored
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Abel Ureta-Vidal authored
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Abel Ureta-Vidal authored
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Abel Ureta-Vidal authored
Updated to schema 20 and now gene descriptions are not uppercased anymore. They are kept as in the original source. Also added -port option and updated the help menu
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Abel Ureta-Vidal authored
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Graham McVicker authored
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- Apr 18, 2004
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Graham McVicker authored
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- Apr 16, 2004
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Abel Ureta-Vidal authored
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- Apr 14, 2004
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Damian Keefe authored
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- Apr 13, 2004
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
Preprocess coordinates by merging adjacent inserts and deletes (mis-matches) so that they are treated like matches. Lose fewer exons this way.
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Graham McVicker authored
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Abel Ureta-Vidal authored
Added methods: hseq_region_name, hseq_region_strand, hseq_region_start and hseq_region_end, that return something if hslice is defined
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- Apr 08, 2004
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Graham McVicker authored
* store xrefs to human genes/transcripts/translations that chimp genes were generated from
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Graham McVicker authored
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Martin Hammond authored
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- Apr 07, 2004
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Graham McVicker authored
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- Apr 06, 2004
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Graham McVicker authored
moved routines related to storing of final genes into Gene package, added splitting of v. long introns, clustering of transcripts into genes, removal of duplicate transcripts and brinnging across xrefs
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Laura Clarke authored
addition of a $sth->finish
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Graham McVicker authored
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Graham McVicker authored
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- Apr 05, 2004
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Graham McVicker authored
chained mapper was already being used even though faster regular mapper could usually have been used (accidentally commited with cache fix commit)
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Graham McVicker authored
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Graham McVicker authored
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- Apr 04, 2004
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Graham McVicker authored
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