make sure the sequence is retrieved for both ends of the region overlapping circular chromosome origin

exons of the genes overlapping chromosome origin are attached to the normal slice, but with negative coordinates

Script to download the ftp files for a particular database using rsync and then process these to install a copy of the database. Hopefully doing all the necessary checks and also zipping and unzipping etc as we go along

Incorrect passing of the DBConnection object to the execute update closure which meant we attempted to call out to attributes which did not exist on that object.

Cannot use the begin_work() command if we have turned off AutoCommit manually. We were doing the same thing

Many improvements to reduce memory usage. Now uses registry, so don't need to specify databases explicitly, just use e.g. -species human

specified.  Patch from Dan S.

not needed and move declaration of a statment handle to aviod having to
declare another one.

Slice::dbID().

attached slice.

allow user to set a list of sources that will not have the [Source:...] bit at the end of the gene description

MGI have added -ps to psuedo gene names but havana have not doen this yet so check for this when getting descriptions etc

push_master_tables.pl.