Commits · 8753ad8b27140489a36699ed58ae78e02bf4b24c · ensembl-gh-mirror / ensembl

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Feb 09, 2011
- Add code to parse and store synonyms from the OBO file. · 8753ad8b
  Andreas Kusalananda Kähäri authored 14 years ago
```
Also only get term definitions from within "...".
```
  8753ad8b
- Added patch_61_61_d · 39877f97
  Monika Komorowska authored 14 years ago
  
  39877f97
- Remove mentionings of "truncate". · 2320cc74
  Andreas Kusalananda Kähäri authored 14 years ago
```
We assume we're running on fresh database.
```
  2320cc74
- Add synonym table to hold term synonyms. · e0435792
  Andreas Kusalananda Kähäri authored 14 years ago
  
  e0435792
- fetch_all_by_name - oops fixed typos · f67176f1
  Nathan Johnson authored 14 years ago
  
  f67176f1
- fetch_all_by_name - Replaced fuzzy matching logic with simple like · afc25421
  Nathan Johnson authored 14 years ago
  
  afc25421
- Remove field 'display_label_linkable' from 'external_db' table. · 76b92b4a
  Monika Komorowska authored 14 years ago
  
  76b92b4a
- Added fetch_all_by_name with fuzzy matching · de54045d
  Nathan Johnson authored 14 years ago
  
  de54045d
- table.sql cleanup · aa9d251e
  Monika Komorowska authored 14 years ago
  
  aa9d251e
Feb 08, 2011
- Changes for patches 61_62_a,b,c · fa66e41a
  Monika Komorowska authored 14 years ago
  
  fa66e41a
- Patch file patch_61_62_c.sql adds unique index to db_name field in external_db table. · 37f638cf
  Monika Komorowska authored 14 years ago
  
  37f638cf
- Patch file patch_61_62_b.sql, extends field synonym in external_synonym table to 100 chars. · 9537ddc8
  Monika Komorowska authored 14 years ago
  
  9537ddc8
- Adding patch for new schema release · 3eec4d74
  Monika Komorowska authored 14 years ago
  
  3eec4d74
- All analysis logic_names should be lower case. · 0273c1cd
  Andreas Kusalananda Kähäri authored 14 years ago
  
  0273c1cd
- analysis.logic_name should be lowercase. · 4eaa541c
  Andreas Kusalananda Kähäri authored 14 years ago
  
  4eaa541c
Feb 07, 2011
- Remove =pod markers and committer name. · f6b95137
  Andreas Kusalananda Kähäri authored 14 years ago
```
Clean up example code (old code had unbalanced quotes and parens).
```
  f6b95137
Feb 04, 2011
- minor changes · 22ba4a2f
  Graham Ritchie authored 14 years ago
  
  22ba4a2f
- adding tests for Iterators · 8fe132b5
  Graham Ritchie authored 14 years ago
  
  8fe132b5
- merge changes from branch 61 · f9cf86fd
  Simon Brent authored 14 years ago
  
  f9cf86fd
Feb 03, 2011
- Added an extra taxonomy id for S. cerevisiae as now EntrezGene for yeast is... · ec045f09
  Arnaud Kerhornou authored 14 years ago
```
Added an extra taxonomy id for S. cerevisiae as now EntrezGene for yeast is attached to the strain level
```
  ec045f09
- Also check for EOF when scanning for end of term. · 29f2ee9d
  Andreas Kusalananda Kähäri authored 14 years ago
  
  29f2ee9d
Feb 01, 2011
- Change the PUBMED label for the VB species (uniformise) · b561f209
  Karyn Megy authored 14 years ago
  
  b561f209
- Use true instead of 1. · 515cf01e
  Andreas Kusalananda Kähäri authored 14 years ago
  
  515cf01e
- Add the four master table views that selects everything from the · 8bf8e02b
  Andreas Kusalananda Kähäri authored 14 years ago
```
corresponding table for which is_current is 1.
```
  8bf8e02b
- Comment mod. · 7dbd3b09
  Andreas Kusalananda Kähäri authored 14 years ago
  
  7dbd3b09
- Add documentation for the get_all_xrefs() method. · 5fa472ed
  Andreas Kusalananda Kähäri authored 14 years ago
  
  5fa472ed
- Add documentation for the get_all_object_xrefs() method. · faf4fab3
  Andreas Kusalananda Kähäri authored 14 years ago
  
  faf4fab3
Jan 31, 2011
- remove extra \n · 7d431df3
  Karyn Megy authored 14 years ago
  
  7d431df3
Jan 28, 2011
- Use boost library release 1.45.0 to parse options · a6e41a15
  Gautier Koscielny authored 14 years ago
  
  a6e41a15
- Ensembl release 61 · 8ca0ab28
  Gautier Koscielny authored 14 years ago
  
  8ca0ab28
- Ensembl 61 release · 4ea3580f
  Gautier Koscielny authored 14 years ago
  
  4ea3580f
- Updating ensembl-dev@ebi.ac.uk --> dev@ensembl.org · 08df6f33
  Andreas Kusalananda Kähäri authored 14 years ago
  
  08df6f33
- Rephrase mention of ensembl-dev. · a7404532
  Andreas Kusalananda Kähäri authored 14 years ago
  
  a7404532
- Rephrase mentionings of ensembl-dev. · c1f3e03d
  Andreas Kusalananda Kähäri authored 14 years ago
  
  c1f3e03d
Jan 27, 2011
- Final (?) changes before the release of Ensembl 61. · 51921958
  Andreas Kusalananda Kähäri authored 14 years ago
  
  51921958
- added a stableId generator for Pristionchus pacificus using WormBase ids · 8d355d92
  epaule authored 14 years ago
  
  8d355d92
- Do not add deprecated entries into databases. · 3b78533f
  Andreas Kusalananda Kähäri authored 14 years ago
```
Properly quote the database name when deleting deprecated entries.
```
  3b78533f
- updated docs · 90257cce
  Ian Longden authored 14 years ago
  
  90257cce
- small change about the FAQ · e9cd9b95
  Ian Longden authored 14 years ago
  
  e9cd9b95
Jan 26, 2011

Subroutine added to optionally wrap values into arrays. Checks to see if the... · 45c81e02

Andy Yates authored 14 years ago

Subroutine added to optionally wrap values into arrays. Checks to see if the value is already an array and if so returns it untouched.

45c81e02