Commits · 8f2623663383a408cc7012c6ab1be84391e5b609 · ensembl-gh-mirror / ensembl

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Jul 25, 2003
- New shell script that will create deltas for all consecutive · 8f262366
  Andreas Kusalananda Kähäri authored 21 years ago
```
revisions of all databases on ftp.ensembl.org.  Uses the files
in /pub/<species>/data/mysql/<db>/*
```
  8f262366
- Retired two files. · 68bc1e02
  Andreas Kusalananda Kähäri authored 21 years ago
  
  68bc1e02
- converter now support for Bio::SearchIO::HSP::GenericHSP to Bio::EnsEMBL::ProteinFeature · 4e3dd78f
  juguang authored 21 years ago
  
  4e3dd78f
Jul 24, 2003
- rewrote a lot of haplo/PAR stuff, other minor adjustments · 49a11a35
  Graham McVicker authored 21 years ago
  
  49a11a35
- dnafrag is officially named seq_region now · bee4cf7b
  Arne Stabenau authored 21 years ago
  
  bee4cf7b
- fix off by one in length of peptide when stop residue is used in sequence · fd1888d9
  Brian Gibbins authored 21 years ago
  
  fd1888d9
Jul 23, 2003
- more haplotype ideas · 6a45446a
  Graham McVicker authored 21 years ago
  
  6a45446a
- add query_identity and target_identity tag in the argument of sub new · d83867d8
  juguang authored 21 years ago
  
  d83867d8
- add description tag in the argument of sub new · cbe02044
  juguang authored 21 years ago
  
  cbe02044
- support to convert to ProteinFeature · e46abf5d
  juguang authored 21 years ago
  
  e46abf5d
Jul 22, 2003
- uses the perc of idt (query and target) from the pmatch conf file · 987efd0a
  Emmanuel Mongin authored 21 years ago
  
  987efd0a
- translate -> transfer, move · 6d6dff8d
  Arne Stabenau authored 21 years ago
  
  6d6dff8d
- minor changes, formatting · 76b7ff0a
  Arne Stabenau authored 21 years ago
  
  76b7ff0a
- Optimized query for register region · d154c61e
  Arne Stabenau authored 21 years ago
  
  d154c61e
- should be 9 tests not 10 · 4936bb9f
  Graham McVicker authored 21 years ago
  
  4936bb9f
- added some more test data to meta table · 52bf022e
  Graham McVicker authored 21 years ago
  
  52bf022e
- added MetaContainer tests · 485ec9f3
  Graham McVicker authored 21 years ago
  
  485ec9f3
- Use cahching for all values. · 422e390a
  Arne Stabenau authored 21 years ago
```
Added get_max_assembly_contig for optimized queries on assembly table.
```
  422e390a
- ideas about haplotypes · b802ac29
  Graham McVicker authored 21 years ago
  
  b802ac29
- changed expected test number from 40 to 41 · e5bd5d16
  Graham McVicker authored 21 years ago
  
  e5bd5d16
- Sync of usage message text. · ad009a81
  Andreas Kusalananda Kähäri authored 21 years ago
  
  ad009a81
Jul 21, 2003
- Removed some superflous tests to make runtests.pl happier. · 5d4b2d14
  Glenn Proctor authored 21 years ago
  
  5d4b2d14
- Now displays the CVS revision in the page foot. · f588858c
  Andreas Kusalananda Kähäri authored 21 years ago
```
Rearranged "use lib qw()".
```
  f588858c
- Cleanup. · cd4ee544
  Andreas Kusalananda Kähäri authored 21 years ago
  
  cd4ee544
Jul 18, 2003
- *** empty log message *** · b8eadc08
  Emmanuel Mongin authored 21 years ago
  
  b8eadc08
- Added code to get options from mapping_conf.pm if -d option is used. Can't... · 607a47e7
  Emmanuel Mongin authored 21 years ago
```
Added code to get options from mapping_conf.pm if -d option is used. Can't check from here if it compiles, hope it does
```
  607a47e7
- added transcript_id to EMBL/GenBank mrna tags · bcc972b5
  Graham McVicker authored 21 years ago
  
  bcc972b5
Jul 17, 2003
- update dna_compress.pl · f3f06832
  Tim Hubbard authored 21 years ago
  
  f3f06832
- update dna_compress.pl · 9b1c2203
  Tim Hubbard authored 21 years ago
  
  9b1c2203
- small update · 4d47ee29
  Graham McVicker authored 21 years ago
  
  4d47ee29
- fix duplicated "NR" in go_xref enum · 0a3c57ce
  Graham McVicker authored 21 years ago
  
  0a3c57ce
- changed GoXref implementation to allow for multiple evidence tags · de00f7df
  Graham McVicker authored 21 years ago
  
  de00f7df
- changed test count from 42 to 44 · f792996a
  Graham McVicker authored 21 years ago
  
  f792996a
- added more/updated tests for go_xrefs · 623b61b2
  Graham McVicker authored 21 years ago
  
  623b61b2
- add dnac table to test db and more external synonym and go_xref test data · 80388edc
  Graham McVicker authored 21 years ago
  
  80388edc
- Created · 4a14ce78
  Glenn Proctor authored 21 years ago
  
  4a14ce78
- Added information about map and marker_map_location tables from Martin Hammond. · 6c5e76de
  Glenn Proctor authored 21 years ago
  
  6c5e76de
- Forgot to die. · af23793e
  Andreas Kusalananda Kähäri authored 21 years ago
  
  af23793e
- Another bug fixed. · 30e06073
  Andreas Kusalananda Kähäri authored 21 years ago
  
  30e06073
- ughfix. · e646bc49
  Andreas Kusalananda Kähäri authored 21 years ago
  
  e646bc49