Commits · 92d42bb006dd642efe25594ecd52807bae35fd65 · ensembl-gh-mirror / ensembl

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Jun 06, 2006
- Add fix for versions that contain the NULL string. · 92d42bb0
  Glenn Proctor authored 18 years ago
  
  92d42bb0
- Added display of statistics by evidence type · 0041cff5
  Glenn Proctor authored 18 years ago
  
  0041cff5
Jun 02, 2006
- Rationalised all primary and foreign keys to be INT(10) UNSIGNED. · 8e14ea7d
  Glenn Proctor authored 18 years ago
```
Added info_type and info_text to UNIQUE index on xref.

Changed version column in xref to default to NULL.
```
  8e14ea7d
- Foreign key definitions for Ensembl schema. Needs InnoDB tables. · f7516627
  Glenn Proctor authored 18 years ago
  
  f7516627
- Change version column in xref to be default 0, not null. · 78534d2c
  Glenn Proctor authored 18 years ago
  
  78534d2c
- Add info_type and info_text to UNIQUE constraint in xref. · 9a73f2f2
  Glenn Proctor authored 18 years ago
  
  9a73f2f2
- Rationalise all primary and foreign keys to be of type INT(10) unsigned. · 3c4023a4
  Glenn Proctor authored 18 years ago
  
  3c4023a4
- Add info_type and info_text to check for existing xrefs. · 2a132341
  Glenn Proctor authored 18 years ago
  
  2a132341
- Fixed query fields out of sync in fetch_by_db_accession and fetch_all_by_description · b18c181e
  Anne Parker authored 18 years ago
  
  b18c181e
Jun 01, 2006
- changed note=pseudogene to note= the actual biptype fro none tranlatable transcripts · f7898626
  Ian Longden authored 18 years ago
  
  f7898626
- added sub fetch_all_by_description · 79fe8420
  Ian Longden authored 18 years ago
  
  79fe8420
- Bug fix: wasn't deleting projected entries from go_xref. · 24c1cb21
  Glenn Proctor authored 18 years ago
```
Also removed obselte delete statements dealing with previous way of labelling projected terms (%[from%).
```
  24c1cb21
May 31, 2006
- Updated version in meta · 3b7a1d31
  Glenn Proctor authored 18 years ago
  
  3b7a1d31
May 30, 2006
- added end_phase to key for exon hash, to stop overwriting of valid exons. · 805de831
  Ian Longden authored 18 years ago
  
  805de831
- MIM fixed by using long info file only. · d3ebb6f8
  Ian Longden authored 18 years ago
  
  d3ebb6f8
- just dump genes of biotype 'protein_coding' or 'pseudogene' · c2d69198
  Ian Longden authored 18 years ago
  
  c2d69198
May 26, 2006
- Added Medaka. · b362259e
  Bronwen Aken authored 18 years ago
  
  b362259e
May 25, 2006
- add dumpcheck to help · 38abdd91
  Ian Longden authored 18 years ago
  
  38abdd91
- add morbid to gene maps aswell as they belong to both · 9dd895d6
  Ian Longden authored 18 years ago
  
  9dd895d6
- removed MIM as there is no way to know if these are morbid or gene maps. · 7d84bbf8
  Ian Longden authored 18 years ago
  
  7d84bbf8
- MIM and GO changes · 56079e5d
  Ian Longden authored 18 years ago
  
  56079e5d
- names changes for MIM · 5a3007d5
  Ian Longden authored 18 years ago
  
  5a3007d5
- added example script for using mapping between two assemblies · 43231908
  Patrick Meidl authored 18 years ago
  
  43231908
- Updated the attrib_codes for Mt_tRNA and Mt_rRNA · d73ef122
  Abel Ureta-Vidal authored 18 years ago
  
  d73ef122
May 24, 2006
- Added cdna and otherfeatures to list of database types. · 489677dc
  Glenn Proctor authored 18 years ago
  
  489677dc
- Clarify MIM labels. · bff25d5c
  Glenn Proctor authored 18 years ago
  
  bff25d5c
- Changed display_label_linkable to 1 for ZFIN to allow searching on symbols in Mart. · c3173b9b
  Glenn Proctor authored 18 years ago
  
  c3173b9b
- Skip "NOT" GO terms. · ff537279
  Glenn Proctor authored 18 years ago
  
  ff537279
- catch exception where no repeats are found on a chunk · 825b2526
  Patrick Meidl authored 18 years ago
  
  825b2526
- Pass dbID, not object, to store methods. · 106fa62f
  Glenn Proctor authored 18 years ago
  
  106fa62f
- · ee1eb24c
  Glenn Proctor authored 18 years ago
```
Clarified source ID for derived GO terms.
```
  ee1eb24c
- Fix to SQL for storing dependent xrefs as part of large graphs, sometimes... · 233cd898
  Glenn Proctor authored 18 years ago
```
Fix to SQL for storing dependent xrefs as part of large graphs, sometimes wouldn't store linkage annotation (e.g. GO evidence code).
```
  233cd898
May 22, 2006
- don't check for same seq_region if no seq_region attached to feature · 2a1330c2
  Patrick Meidl authored 18 years ago
  
  2a1330c2
- added MIM_GENE and MIM_MORBID to the list of external databases · 5a29ab03
  Ian Longden authored 18 years ago
  
  5a29ab03
May 19, 2006
- new status for some vega genes · 8e514242
  Steve Trevanion authored 18 years ago
  
  8e514242
- Change in get_Species(): return a valid object even if the species has no common name · 5d976542
  Javier Herrero authored 18 years ago
  
  5d976542
May 18, 2006
- Store projected seq_region_id as well. · 8118a9e7
  Glenn Proctor authored 18 years ago
  
  8118a9e7
- · d399cd84
  Jan-hinnerk Vogel authored 18 years ago
```
download_dir can be specified using options in xref_parser.pl
```
  d399cd84
- · 1c09b46d
  Jan-hinnerk Vogel authored 18 years ago
```
fix added ; now checks nr of entries in object_xref table as well before throwing
```
  1c09b46d
- · c2061772
  Jan-hinnerk Vogel authored 18 years ago
```
option -download_dir added to specify dir where the files are downloaded to
```
  c2061772