Commits · 9d6eb011dd473c95e04b98d54ee86fdb5ecd6b03 · ensembl-gh-mirror / ensembl

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Apr 29, 2005

Fixed POD typo · 9d6eb011
Will Spooner authored 19 years ago

9d6eb011

Added get_all_homologous_Genes to Bio::EnsEMBL::Gene that returns the... · c10d0eaa

Will Spooner authored 19 years ago

Added get_all_homologous_Genes to Bio::EnsEMBL::Gene that returns the Bio::EnsEMBL::Gene and Bio::EnsEMBL::Compara::Homology objects for each corresponding homologous gene in the Compara DB. Changed EnsEMBL::Web::Data::Gene to use this call with the benefit that the Compara DB gets hit obce only per GeneView request

c10d0eaa

Apr 20, 2005
- Fix the length of the RepeatConsensus when the sequence is like "xxx(N)" · d8fd649b
  Javier Herrero authored 19 years ago
  
  d8fd649b
Apr 18, 2005
- added biotype, confidence and description · db9e81ca
  Arne Stabenau authored 19 years ago
  
  db9e81ca
- added biotype, source, confidence removed description as separate table · b3861b19
  Arne Stabenau authored 19 years ago
  
  b3861b19
- produce ordered results in sub _type_by_external_id · a90b9f0d
  Arne Stabenau authored 19 years ago
  
  a90b9f0d
- shouldnt eat input list, somwbody might want to use it (me!) · 33535f63
  Arne Stabenau authored 19 years ago
  
  33535f63
- new columns in gene,transcript. removed gene_description · 5e2da580
  Arne Stabenau authored 19 years ago
  
  5e2da580
- gene_description table testing removed, table doesnt exist any more · 3f599e6b
  Arne Stabenau authored 19 years ago
  
  3f599e6b
- type ensembl removed from test, is not allowed any more · 3b0b489b
  Arne Stabenau authored 19 years ago
  
  3b0b489b
- updated test count · bfad53cf
  Arne Stabenau authored 19 years ago
  
  bfad53cf
Apr 12, 2005
- Modifed regulatory feature tests for fetch_all -> get_all · 02a80c53
  Glenn Proctor authored 19 years ago
  
  02a80c53
- Updated comment. · 2d4cca72
  Glenn Proctor authored 19 years ago
  
  2d4cca72
- fetch_all_regulatory_features->get_all_regulatory_features · 37704387
  Glenn Proctor authored 19 years ago
  
  37704387
Apr 11, 2005
- .. and put it back on the head. · 66a36bc3
  Glenn Proctor authored 19 years ago
  
  66a36bc3
- Removed some functionality that should not have been in branch 30 · d9583c70
  Glenn Proctor authored 19 years ago
  
  d9583c70
Apr 08, 2005
- allow isa check also. Xref system uses a dbadptor as base class so has a... · 8ef3040c
  Ian Longden authored 20 years ago
```
allow isa check also. Xref system uses a dbadptor as base class so has a different name but still isa
```
  8ef3040c
Apr 06, 2005
- Typo · b4cb70eb
  Glenn Proctor authored 20 years ago
  
  b4cb70eb
Apr 05, 2005
- Allow 7 args as well as 6 in map · 59eebac6
  Stephen Searle authored 20 years ago
  
  59eebac6
- Added supporting feature lazy loading · 17c888b4
  Stephen Searle authored 20 years ago
  
  17c888b4
- New adaptor for transcript supporting features · 0dde70c8
  Stephen Searle authored 20 years ago
  
  0dde70c8
- Added supporting feature store · 39a0fdff
  Stephen Searle authored 20 years ago
  
  39a0fdff
- Added TranscriptSupportingFeatureAdaptor · 2dd5aed8
  Stephen Searle authored 20 years ago
  
  2dd5aed8
- Changed from using toplevel to chromosome coordinate systems · c744b912
  Stephen Searle authored 20 years ago
  
  c744b912
Apr 01, 2005
- better handlers archive stable ids · bac4579b
  Web Admin authored 20 years ago
  
  bac4579b
Mar 31, 2005

Implemented store method for Marker objects in MarkerAdaptor, and added... · 2e126863

Will Spooner authored 20 years ago

Implemented store method for Marker objects in MarkerAdaptor, and added recursive store functionality to MarkerFeatureAdaptor

2e126863

Mar 30, 2005
- allow for undef returned as mapper from AssemblyMapperAdaptor · 3eacfbc0
  Arne Stabenau authored 20 years ago
  
  3eacfbc0
- Added missing directories · df3df556
  Glenn Proctor authored 20 years ago
  
  df3df556
Mar 24, 2005
- *** empty log message *** · c06c2c8f
  Glenn Proctor authored 20 years ago
  
  c06c2c8f
- Added fetch_all_by* methods. · 137d91cc
  Glenn Proctor authored 20 years ago
  
  137d91cc
- Added fetch_all_regulatory_features() · 77990c6d
  Glenn Proctor authored 20 years ago
  
  77990c6d
- Added test for fetch_all_regulatory_features() · b589d3d2
  Glenn Proctor authored 20 years ago
  
  b589d3d2
- Added tables & test data for regulatory features etc · 7233245a
  Glenn Proctor authored 20 years ago
  
  7233245a
- Added RegualtoryFeature and RegulatoryMotif to list for generating adaptors automatically.. · 3c0542b4
  Glenn Proctor authored 20 years ago
  
  3c0542b4
- Tests for RegulatoryMotifAdaptor.pm · e3297cdc
  Glenn Proctor authored 20 years ago
  
  e3297cdc
- Tests for RegulatoryFeatureAdaptor.pm · a6425c76
  Glenn Proctor authored 20 years ago
  
  a6425c76
- Tests for RegulatoryMotif.pm · a137d4cd
  Glenn Proctor authored 20 years ago
  
  a137d4cd
- Tests for RegulatoryFeature.pm · 2d2a1274
  Glenn Proctor authored 20 years ago
  
  2d2a1274
- Database retrieval and storage for regulatory features. · 66853e3f
  Glenn Proctor authored 20 years ago
  
  66853e3f
- Database retrieval & storage for regulatory motifs. · f336e29a
  Glenn Proctor authored 20 years ago
  
  f336e29a