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- Jul 06, 2010
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Andreas Kusalananda Kähäri authored
=head2 load Arg [1] : Boolean $load_xrefs Load (or don't load) xrefs. Default is to load xrefs. Example : $translation->load(); Description : The Ensembl API makes extensive use of lazy-loading. Under some circumstances (e.g., when copying genes between databases), all data of an object needs to be fully loaded. This method loads the parts of the object that are usually lazy-loaded. Returns : Nothing. =cut
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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- Jul 02, 2010
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Gautier Koscielny authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Simplify cdna_start() and cdna_end() by use of transcript().
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Transcript.pm. Avoids littering the code with calls to weaken().
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- Jul 01, 2010
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Andreas Kusalananda Kähäri authored
Scalar::Util::weaken() to avoid memory leak.
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Andreas Kusalananda Kähäri authored
* Add a transcript() method to the Translation object to retrieve its Transcript. * Modify seq() in Translation so that it temporarily swaps out the canonical translation of the transcript if needed.
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- Jun 29, 2010
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
replace the Bio::EnsEMBL::Collection modules in release 60.
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- Jun 28, 2010
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
The is_current attribute was set to 1 when the transcript had it set to 0. There's a difference between undef and 0...
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Ian Longden authored
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Ian Longden authored
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Andreas Kusalananda Kähäri authored
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Ian Longden authored
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Andreas Kusalananda Kähäri authored
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Ian Longden authored
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- Jun 25, 2010
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Nathan Johnson authored
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- Jun 24, 2010
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Ian Longden authored
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Ian Longden authored
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- Jun 22, 2010
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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- Jun 21, 2010
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Ian Longden authored
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Andy Yates authored
Bugfix to _list_dbIDs() when it was using the generic bind params method from DBAdaptor however we never went through generic_fetch() so params were never bound.
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- Jun 18, 2010
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Graham Ritchie authored
added support for fetching somatic mutations from a slice, and tidied up the general variation feature fetching code
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Andreas Kusalananda Kähäri authored
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Ian Longden authored
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- Jun 17, 2010
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Pointed out by Andy Yates.
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- Jun 16, 2010
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Ian Longden authored
reset staus for genes and transcripts to those from havana if ALL transcripts for a gene and the gene itself have a valid status in havana
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Bronwen Aken authored
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Andreas Kusalananda Kähäri authored
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Susan Fairley authored
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Susan Fairley authored
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- Jun 15, 2010
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William McLaren authored
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Ian Longden authored
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