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- May 26, 2004
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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- May 25, 2004
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Graham McVicker authored
added immediate loading of PredictionExons option to PredictionTranscript slice fetching; faster than lazy-loading for many use cases
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Will Spooner authored
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Graham McVicker authored
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Graham McVicker authored
added optimisation: Transcripts and Exons can now be loaded immediately on Gene fetch rather than lazy-loading later
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Graham McVicker authored
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Graham McVicker authored
bug fix: Translation start_exon and end_exon for PredictionTranscripts should not have been strand dependant
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Steve Trevanion authored
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- May 24, 2004
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Graham McVicker authored
transcript fetching optimisations, allows optional immediate exon loading as opposed to lazy-loading
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Steve Trevanion authored
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Steve Trevanion authored
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Steve Trevanion authored
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Graham McVicker authored
applied patch (from March!) from David Craigon to allow fetch_by_name to work w/o start/end/strand values
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Graham McVicker authored
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Graham McVicker authored
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Steve Trevanion authored
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
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- May 21, 2004
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Graham McVicker authored
store each density feature as it is created rather than building a list per seq_region - smaller memory footprint (but repeats still leaking mem)
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Graham McVicker authored
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Graham McVicker authored
changed selenocystein implementation to use SeqEdits and be more consistant with Transcript implementatin
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
for now edits are disabled by default, b/c will slow down dumping, also flush TranscriptMapper when enabling/disabling edits
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- May 20, 2004
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Arne Stabenau authored
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- May 18, 2004
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Graham McVicker authored
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Graham McVicker authored
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Graham McVicker authored
changed transcript edit implementation to use SeqEdits and made it possible to enable/disable editing
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Graham McVicker authored
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- May 17, 2004
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Graham McVicker authored
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Graham McVicker authored
supercontig length should be max(superctg_end) not length because occasionally supercontigs do not start at 1
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Arne Stabenau authored
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Arne Stabenau authored
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- May 15, 2004
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Jessica Severin authored
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