Commits · b0d4e925e5dc3be62c2e55384758e1659835451c · ensembl-gh-mirror / ensembl

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Feb 09, 2000
- Fixed strand bug in GenscanPeptide · b0d4e925
  Michele Clamp authored 25 years ago
  
  cvs/attic/branch-ensembl-m1
  
  b0d4e925
Feb 02, 2000
- Fixed bug in Genscan where transcripts with no exons were being created where · 37bd46b6
  Michele Clamp authored 25 years ago
```
a genscan file only contained a promoter prediction.
```
  37bd46b6
- Added supporting_evidence contig name check · 27f345dd
  Michele Clamp authored 25 years ago
```
Features seqname is now the contig id
Deleted debugging print line from Obj
Removed one absolute path from transfer_Clone
```
  27f345dd
- Added supporting_evidence contig name check · 0bf81cc0
  Michele Clamp authored 25 years ago
```
Features seqname is now the contig id
Deleted debugging print line from Obj
```
  0bf81cc0
- Added supporting_evidence contig name check · e0f89907
  Michele Clamp authored 25 years ago
```
Features seqname is now the contig id
```
  e0f89907
- Added supporting_evidence contig name check · e1f1bcdc
  Michele Clamp authored 25 years ago
  
  e1f1bcdc
Jan 27, 2000
- This commit was manufactured by cvs2svn to create branch 'branch- · a01c7624
  cvs2git authored 25 years ago
```
ensembl-m1'.

Sprout from master 2000-01-27 16:46:21 UTC Elia Stupka <elia@sanger.ac.uk> 'updated write_Gene'
Delete:
    modules/EnsEMBL/README
```
  a01c7624
- updated write_Gene · cde969a5
  Elia Stupka authored 25 years ago
  
  cde969a5
- *** empty log message *** · 06486b83
  James Gilbert authored 25 years ago
  
  06486b83
- Final dump of the tables - including indexes. · a9e70388
  Michele Clamp authored 25 years ago
  
  a9e70388
- Added dbdiff which gives stats about tables in the database · 9e9480c0
  Michele Clamp authored 25 years ago
```
Added scripts.
```
  9e9480c0
- Added dbdiff which gives stats about tables in the database · 62a849ef
  Michele Clamp authored 25 years ago
  
  62a849ef
- *** empty log message *** · 5f15c4d1
  Michele Clamp authored 25 years ago
  
  5f15c4d1
- fixed minor bug · 0b7a25b5
  Ewan Birney authored 25 years ago
  
  0b7a25b5
- added supp.evidence in Clone.pm, fixed update.pl · 85ac3a67
  Elia Stupka authored 25 years ago
  
  85ac3a67
- Fixed little things here and there.. · 6766e6a0
  Elia Stupka authored 25 years ago
  
  6766e6a0
- Fixed transfer.pl · a8422050
  Elia Stupka authored 25 years ago
  
  a8422050
Jan 26, 2000
- Added supp.evidence to Obj->write_Gene and to update.pl Added also -nowrite... · 1651f640
  Elia Stupka authored 25 years ago
```
Added supp.evidence to Obj->write_Gene and to update.pl Added also -nowrite -usefile and timdb to update.pl
```
  1651f640
- Added supporting evidence to get_gene methods · 07e79c9b
  Elia Stupka authored 25 years ago
  
  07e79c9b
- added embl dumping things · 1218a991
  Ewan Birney authored 25 years ago
  
  1218a991
- added different gene to clone · d52b5ae7
  Tony Cox authored 25 years ago
  
  d52b5ae7
- added new embl dumping stuff · fc618cde
  Ewan Birney authored 25 years ago
  
  fc618cde
Jan 25, 2000
- Changed parameters · f0b938c2
  Elia Stupka authored 25 years ago
  
  f0b938c2
Jan 24, 2000
- Supporting features generated properly in Exon.pm and get/set methods changed... · af944dcf
  Michele Clamp authored 25 years ago
```
Supporting features generated properly in Exon.pm and get/set methods changed to reflect the loss of the contig column
```
  af944dcf
- Geneview now sorts properly · 34eac168
  Michele Clamp authored 25 years ago
```
Fset table has a proper integer auto_increment and a primary key
```
  34eac168
- Geneview now sorts properly · d5c35dae
  Michele Clamp authored 25 years ago
  
  d5c35dae
- Fixed geneview · 595f58e0
  Michele Clamp authored 25 years ago
  
  595f58e0
Jan 23, 2000
- added and fixed tests · 56704ef4
  Ewan Birney authored 25 years ago
  
  56704ef4
- tests stuff · 8c8b7aff
  Ewan Birney authored 25 years ago
  
  8c8b7aff
- made database tests better · 2fc07537
  Ewan Birney authored 25 years ago
  
  2fc07537
- added ghost test · caca9c99
  Ewan Birney authored 25 years ago
  
  caca9c99
- added ghosts · a99da043
  Ewan Birney authored 25 years ago
  
  a99da043
- added total clone count info · ce0e7581
  humpub authored 25 years ago
  
  ce0e7581
- Changed get_supporting_evidence in Obj.pm so it gets evidence for · e7de4c58
  Michele Clamp authored 25 years ago
```
more than one exon at a time.
Corrected write_supporting_evidence in Contig.pm so the contig id is
correct.
```
  e7de4c58
- Added geneview.pl to view supporting evidence · 0009ea72
  Michele Clamp authored 25 years ago
  
  0009ea72
Jan 22, 2000

added fset support · 920a28c9
Ewan Birney authored 25 years ago

920a28c9

Genscan predictions are read into features. · 89a7244b

Michele Clamp authored 25 years ago

Supporting evidence is written into the DBSQL database.
transfer.pl finds and writes supporting evidence
Contig fetches predicted features
Supporting feature table expanded

89a7244b

Genscan predictions are read into features. · fad41fd7

Michele Clamp authored 25 years ago

Supporting evidence is written into the DBSQL database.
transfer.pl finds and writes supporting evidence
Contig fetches predicted features

fad41fd7

Genscan predictions are read into features. · 416a24f2
Michele Clamp authored 25 years ago
```
Supporting evidence is written into the DBSQL database.
Contig fetches predicted features
```
416a24f2
Genscan predictions are read into features. · 7573486b
Michele Clamp authored 25 years ago
```
Supporting evidence is written into the DBSQL database.
```
7573486b