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- Sep 25, 2013
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Magali Ruffier authored
ChEMBL xrefs are now being imported
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- Jul 18, 2013
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Andy Yates authored
Ok that was dumb. Do not under any circumstances add /xms to a regex that really depends on whitespace. Oddly enough it will not match anything
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Andy Yates authored
Slight change in logic. Do not skip a UniProt reecord because it is Ensembl derived annotation. Choose not to import the Gene Name into our system
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- Jun 28, 2013
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Magali Ruffier authored
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- Jun 19, 2013
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Magali Ruffier authored
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- Feb 20, 2013
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Magali Ruffier authored
GenomeRNAi is a fly source, should not be parsed in any other species, just because Uniprot mentioned it exists
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- Dec 06, 2012
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Magali Ruffier authored
data should rely on protein evidence levels provided by Uniprot
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- Aug 01, 2012
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Monika Komorowska authored
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- Jun 25, 2012
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- Mar 27, 2012
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Monika Komorowska authored
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- Feb 22, 2012
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Andy Yates authored
Attempting to fix the issues with too many KNOWN status genes appearing in species we should not be seeing them in. UniProtParser now limits to using ACs with an evidence of 1 and 2. We now do not assign KNOWN based upon a depdendent xref when we didn't trust the parent xref. Also the loader & SQL has been edited to allow for LOWEVIDENCE types of sources.
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- Jan 10, 2012
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Arnaud Kerhornou authored
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- Jan 06, 2012
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Andy Yates authored
Update to description line parsing by EG's request. Seaprate multiple description lines with ; rather than concatenating them together into an un-fathomable string.
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- Oct 06, 2011
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Monika Komorowska authored
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- Sep 20, 2011
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Ian Longden authored
Replaced XrefParser::BaseParser with self. Lots of parameters changes, going from list to hash based parsing for easy maintainance
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- Sep 15, 2011
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Ian Longden authored
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- Sep 13, 2011
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Ian Longden authored
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- Jul 14, 2011
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Ian Longden authored
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- Jul 13, 2011
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Ian Longden authored
changed the setting of the accession for unigene to call a subroutine so that this can be overwritten in an alternative version to be used here but ensembl genomes to use the original still
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- Jul 05, 2011
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Ian Longden authored
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- Jun 24, 2011
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Ian Longden authored
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Ian Longden authored
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Ian Longden authored
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- Mar 03, 2011
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Ian Longden authored
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- Feb 21, 2011
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Arnaud Kerhornou authored
Updated UniProt_genename xref population code, now the ACCESSION attribute uses the UniProt accession number rather than the gene name
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- Dec 16, 2010
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Ian Longden authored
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- Nov 15, 2010
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Ian Longden authored
reduce description to the RecNAME full or if that is not present the Subname Full. Also remove EC numbers
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- Jun 08, 2010
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Ian Longden authored
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- Jan 28, 2010
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Ian Longden authored
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- Dec 11, 2009
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Ian Longden authored
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- Nov 04, 2009
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Ian Longden authored
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- Jul 21, 2009
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Ian Longden authored
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- Mar 31, 2009
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Ian Longden authored
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- Mar 04, 2009
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Ian Longden authored
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- Nov 08, 2008
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Ian Longden authored
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- Sep 18, 2008
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Ian Longden authored
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- Sep 02, 2008
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Ian Longden authored
-verbose option added which also need to change run subroutine to get the file/s via a ref to and array then an array
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- Jul 18, 2008
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Ian Longden authored
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- Jun 10, 2008
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Ian Longden authored
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- Mar 12, 2008
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Ian Longden authored
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